PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000169115
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family GRAS
Protein Properties Length: 471aa    MW: 53926.2 Da    PI: 6.7598
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000169115genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS293.75e-90894701373
           GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 
                    l++ Ll  A+av++++   a + L++l + +s +gd++qR++ayf+  Laarl+   s  y+++  ++ts    +ee+ a+++++ vsP+++f+h+
  MDP0000169115  89 LIHMLLITATAVNENNVGSALEHLTELYKSVSLSGDSIQRVVAYFADSLAARLLTRRSPFYDIIMKEPTS----EEEFVAFTALYRVSPYYQFAHF 180
                    6899***************************************************9*****999888885....78889999************** PP

           GRAS  97 taNqaIleavege.....ervHiiDfdisqGlQWpaLlqaLasRp..egppslRiTgvgspesgskeeleetgerLakfAeel.gvpfefnvlvak 184
                    ta qaI ea+e+e     +++H+iDfd+s+G+QW++L+q+L++++  ++  slRiTg+g+    s +el+et++rL+ f + + ++ fef+ l   
  MDP0000169115 181 TAIQAIIEAFEKEeeknnRALHVIDFDVSYGFQWASLIQSLSEKAssRKRISLRITGFGR----SVDELRETENRLTTFSNGFqNLAFEFQGL--- 269
                    ***********9977777788***********************95444559********....9***************99757*******8... PP

           GRAS 185 rledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklprese 280
                     l   +l +Lr k++E+laVnlv++l +l  +++++++    +Lk v  l+P +v++veqe  ++  +Fl rf+e+l+y++a+fdsl++ lp es 
  MDP0000169115 270 -LRGSKLVNLRKKRNETLAVNLVFHLNTLS-NNLKISD----LLKSVHLLNPSIVILVEQEGTRSPRRFLSRFMESLHYFAAMFDSLDECLPLESA 359
                    .66667789*****************9997.5566655....****************************************************** PP

           GRAS 281 erikvErellgreivnvvacegae..rrerhetlekWrerleeaGFkpvplsekaakqaklllr..kvk.sdgyrveee............sgslv 359
                    er ++E+  lg+ei++++   +++     + e++e+W++r+e+ GF+ ++ls++   qa+lll+  +++ s  +  e++            +g  +
  MDP0000169115 360 ERLSIEKNHLGKEIKSMLNYDNNNddNCLKIEKMETWKARMESHGFEGINLSSRSKIQARLLLKirTHYcSLDFDGESNgaaagfkvfdrdDGRTI 455
                    ******************9776652267799*******************************9732333333344443344444444444566555 PP

           GRAS 360 .lgWkdrpLvsvSaW 373
                     lgW+dr L++vSaW
  MDP0000169115 456 sLGWQDRYLLTVSAW 470
                    6************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098547.26163435IPR005202Transcription factor GRAS
PfamPF035141.7E-8789470IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 471 aa     Download sequence    Send to blast
MEDIDEEEEL LNLSLAIVTS TGRERFRKRK RSRDDGVANG SVSPLNSYEG CEGKIFRLLQ  60
MREQMLKNLD HHKKKGVDVD DEDGKGLHLI HMLLITATAV NENNVGSALE HLTELYKSVS  120
LSGDSIQRVV AYFADSLAAR LLTRRSPFYD IIMKEPTSEE EFVAFTALYR VSPYYQFAHF  180
TAIQAIIEAF EKEEEKNNRA LHVIDFDVSY GFQWASLIQS LSEKASSRKR ISLRITGFGR  240
SVDELRETEN RLTTFSNGFQ NLAFEFQGLL RGSKLVNLRK KRNETLAVNL VFHLNTLSNN  300
LKISDLLKSV HLLNPSIVIL VEQEGTRSPR RFLSRFMESL HYFAAMFDSL DECLPLESAE  360
RLSIEKNHLG KEIKSMLNYD NNNDDNCLKI EKMETWKARM ESHGFEGINL SSRSKIQARL  420
LLKIRTHYCS LDFDGESNGA AAGFKVFDRD DGRTISLGWQ DRYLLTVSAW H
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A3e-52734703378Protein SCARECROW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12232RERFRKRKRSR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008382143.10.0scarecrow-like protein 23
TrEMBLA0A498IZZ90.0A0A498IZZ9_MALDO; Uncharacterized protein
STRINGXP_008348849.10.0(Malus domestica)
STRINGXP_008358631.10.0(Malus domestica)
STRINGXP_008382143.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF62002952
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G04890.12e-48SCARECROW-like 21