PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000168914 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 237aa MW: 26277.2 Da PI: 9.5103 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 65.8 | 4.3e-21 | 21 | 62 | 4 | 45 |
-SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 n qvtfskRr g++KKA+EL++LC++e+a+i+fs+ +k MDP0000168914 21 PKRNNLQVTFSKRRSGLFKKASELCTLCGVEIAIIVFSPANK 62 566789*********************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 22.806 | 10 | 70 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 8.7E-30 | 10 | 69 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 3.67E-32 | 11 | 78 | No hit | No description |
SuperFamily | SSF55455 | 4.19E-26 | 11 | 85 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.5E-17 | 12 | 32 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.3E-24 | 19 | 66 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.5E-17 | 32 | 47 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.5E-17 | 47 | 68 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 237 aa Download sequence Send to blast |
MVMKIKKPSQ GRQKIAIAKI PKRNNLQVTF SKRRSGLFKK ASELCTLCGV EIAIIVFSPA 60 NKPFSFGHPE VDSIVDRFVA RNPYPNFQAG STGSTQQLVE VHRNASVHEL NMQLTQVVNQ 120 LEAEKKCGEA LDKISKASEK QCWWERSVEE LGFHELQILK ASLEELKKNM TKQANGILME 180 SSAAAVANCS SSSSPFFMMN INGVVQGDDL RCFESKIKPT NQLGSAYSFG YAGHSLF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3kov_A | 1e-15 | 11 | 82 | 1 | 72 | Myocyte-specific enhancer factor 2A |
3kov_B | 1e-15 | 11 | 82 | 1 | 72 | Myocyte-specific enhancer factor 2A |
3kov_I | 1e-15 | 11 | 82 | 1 | 72 | Myocyte-specific enhancer factor 2A |
3kov_J | 1e-15 | 11 | 82 | 1 | 72 | Myocyte-specific enhancer factor 2A |
3p57_A | 1e-15 | 11 | 82 | 1 | 72 | Myocyte-specific enhancer factor 2A |
3p57_B | 1e-15 | 11 | 82 | 1 | 72 | Myocyte-specific enhancer factor 2A |
3p57_C | 1e-15 | 11 | 82 | 1 | 72 | Myocyte-specific enhancer factor 2A |
3p57_D | 1e-15 | 11 | 82 | 1 | 72 | Myocyte-specific enhancer factor 2A |
3p57_I | 1e-15 | 11 | 82 | 1 | 72 | Myocyte-specific enhancer factor 2A |
3p57_J | 1e-15 | 11 | 82 | 1 | 72 | Myocyte-specific enhancer factor 2A |
5f28_A | 2e-15 | 11 | 82 | 2 | 73 | MEF2C |
5f28_B | 2e-15 | 11 | 82 | 2 | 73 | MEF2C |
5f28_C | 2e-15 | 11 | 82 | 2 | 73 | MEF2C |
5f28_D | 2e-15 | 11 | 82 | 2 | 73 | MEF2C |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expressed during the syncytial endosperm development. {ECO:0000269|PubMed:18334668}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in the endosperm but not in the embryo. Detected in young siliques, roots, leaves, stems, young flowers and anthers. {ECO:0000269|PubMed:18334668}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. Required for suppression of cellularization and promotion of nuclear proliferation during early endosperm development. The FERTILIZATION-INDEPENDENT SEED (FIS) polycomb complex is required for suppression of ALG62 expression at the end of the syncytial phase of endosperm development. {ECO:0000269|PubMed:18334668}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028964768.1 | 1e-177 | agamous-like MADS-box protein AGL62 | ||||
Swissprot | Q9FKK2 | 1e-55 | AGL62_ARATH; Agamous-like MADS-box protein AGL62 | ||||
TrEMBL | A0A498IWI1 | 1e-165 | A0A498IWI1_MALDO; Uncharacterized protein | ||||
STRING | XP_009335378.1 | 1e-148 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF128 | 33 | 331 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60440.1 | 8e-57 | AGAMOUS-like 62 |
Link Out ? help Back to Top | |
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Phytozome | MDP0000168914 |
Publications ? help Back to Top | |||
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