PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000168871 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | WRKY | ||||||||
Protein Properties | Length: 482aa MW: 52609 Da PI: 6.1694 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 97.5 | 9e-31 | 249 | 307 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +D ++WrKYGqK++kgs++pr+YYrC+s+ gC+++k+vers++dpk+++itY++eHnh+ MDP0000168871 249 SDLWAWRKYGQKPIKGSPYPRGYYRCSSSkGCSARKQVERSRTDPKMLVITYTSEHNHP 307 699************************998****************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50811 | 33.43 | 243 | 309 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 8.2E-31 | 245 | 309 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 6.15E-26 | 246 | 309 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.9E-37 | 248 | 308 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.1E-25 | 250 | 307 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 482 aa Download sequence Send to blast |
MENFQGDLTD ILRAGTTTAT VGADPSDHQE PYTDSWHFPS DHRMIFPSSS SAMEEAEETK 60 DNFGDPFLSY MRDPLLNELG ISSSSLFSSP NCTARAEEDV TTTTFGSGGD GSHHVLSLGH 120 HNHQSGGVVV DGDPIKRPYN IFSRMLQISP SAKVPVSPCD SPVIGAAVSS SPREIKTSSA 180 STAMVASDMI INANSSSAAK GCLLENTGMQ ISSPRNPGIK RRKSQAKKVV CIPAPAAANS 240 RPTGEVVPSD LWAWRKYGQK PIKGSPYPRG YYRCSSSKGC SARKQVERSR TDPKMLVITY 300 TSEHNHPWPT QRNALAGSTR SQPSKNGGAA ALKISPNSSH QPHQKPTGPT KEEQNENVND 360 NDDNHMSPTV ITAGSASTVK EEFEDVEKQL ELDHHHHQQL GFAYRPSMPD EQSNQSHHLD 420 DFFADLGEIE ADPLNLLFLQ CFSADEQQQK AAEPLDPFNL LDNWSGDHNT NNTSFAEAKR 480 RL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5w3x_B | 2e-24 | 223 | 310 | 2 | 80 | Disease resistance protein RRS1 |
5w3x_D | 2e-24 | 223 | 310 | 2 | 80 | Disease resistance protein RRS1 |
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Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mdo.26333 | 0.0 | fruit |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008367402.1 | 0.0 | probable WRKY transcription factor 14 | ||||
TrEMBL | A0A498JUJ1 | 0.0 | A0A498JUJ1_MALDO; Uncharacterized protein | ||||
STRING | XP_008367402.1 | 0.0 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5430 | 34 | 54 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G30650.1 | 6e-83 | WRKY DNA-binding protein 14 |
Link Out ? help Back to Top | |
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Phytozome | MDP0000168871 |