PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000168614
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family Whirly
Protein Properties Length: 402aa    MW: 44322 Da    PI: 10.0635
Description Whirly family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000168614genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Whirly206.43.2e-64591942137
         Whirly   2 vyktkaalkvkavrptfealdsgnlklkraGglllelanataerkydWekkqsfalsatevaelvdlaskesceffhdpaakgsneGkvrkalkve 97 
                    ++k+kaal++ +v+ptf++l+sg+l+++r+G+++l++++a++erkydWek+q falsatev+ l++l+s++sce+fhdp++k+sn+G+vrk+l+++
  MDP0000168614  59 IFKGKAALSLTPVLPTFTKLESGSLVVDRRGSVMLKFTPAIGERKYDWEKRQMFALSATEVGALISLGSNDSCELFHDPSMKSSNAGQVRKSLSIK 154
                    9*********************************************************************************************** PP

         Whirly  98 PlpdGsGlfvnlsvtnslvkgnesfsvPvskaefavlrsl 137
                    P++dGsG+fv+l+v n+l+k+ esfsvPv+ aefav++++
  MDP0000168614 155 PHADGSGYFVSLTVVNNLLKTRESFSVPVTTAEFAVMKTA 194
                    **************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.30.31.101.4E-7446212IPR009044ssDNA-binding transcriptional regulator
SuperFamilySSF544474.71E-6451216IPR009044ssDNA-binding transcriptional regulator
PfamPF085363.9E-6059193IPR013742Plant transcription factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006281Biological ProcessDNA repair
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005739Cellular Componentmitochondrion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 402 aa     Download sequence    Send to blast
MLKVLRVLSS STTKFRSHFC TRDASSMYAY THITRFSTAT QKFSVKGPSS HQVYASFDIF  60
KGKAALSLTP VLPTFTKLES GSLVVDRRGS VMLKFTPAIG ERKYDWEKRQ MFALSATEVG  120
ALISLGSNDS CELFHDPSMK SSNAGQVRKS LSIKPHADGS GYFVSLTVVN NLLKTRESFS  180
VPVTTAEFAV MKTACSFALP HIMGWDRLTN KMPAGGGGGG GGQESKAVPQ LLEDSSATNC  240
CYISNNRKQE GEFNDFSLSD PSDKPPIPIP IPIPIPPDQQ PTVDAIALVI HPNFANARLR  300
RWKISDTSSG CTRNLFKELV IKKGSSVANR RCSYSLPMNK FFFIALHWSD KRLFTEGRAV  360
EDCLTTKLKA IGQTKLHISM MDWGVMSYVT FNILANVSIR TQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4kop_A6e-84502128170Single-stranded DNA-binding protein WHY2, mitochondrial
4kop_B6e-84502128170Single-stranded DNA-binding protein WHY2, mitochondrial
4kop_C6e-84502128170Single-stranded DNA-binding protein WHY2, mitochondrial
4kop_D6e-84502128170Single-stranded DNA-binding protein WHY2, mitochondrial
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.34330.0bud| fruit| leaf
Functional Description ? help Back to Top
Source Description
UniProtSingle-stranded DNA-binding protein that may be involved in the maintenance of mitochondrial genome stability by preventing break-induced DNA rearrangements. {ECO:0000269|PubMed:21911368}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001315715.11e-169single-stranded DNA-bindig protein WHY2, mitochondrial-like
SwissprotD9J0341e-85WHY2_SOLTU; Single-stranded DNA-binding protein WHY2, mitochondrial
TrEMBLA0A498K2I01e-168A0A498K2I0_MALDO; Uncharacterized protein
STRINGXP_008348715.11e-169(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF113833338
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71260.11e-87WHIRLY 2