PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000168543
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family C3H
Protein Properties Length: 542aa    MW: 60014.7 Da    PI: 7.8461
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000168543genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.35.4e-08141161526
                    --SGGGGTS--TTTTT-SS-SS CS
        zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                     C++f++ G+Ck Gd+C FaHg
  MDP0000168543 141 ACPDFRK-GHCKKGDTCEFAHG 161
                    7******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501036.0888125IPR000571Zinc finger, CCCH-type
SMARTSM003561.9E-5136162IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.732137163IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.5E-5141163IPR000571Zinc finger, CCCH-type
PfamPF006425.8E-6141161IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.615171195IPR000571Zinc finger, CCCH-type
SMARTSM0035613171194IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005886Cellular Componentplasma membrane
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 542 aa     Download sequence    Send to blast
MMLGEPHRPN PTVHVPPWLQ LDDPTAEMYS PYPLSGVSVN SDGNASGADF NSPYYLDDAL  60
TTLQRFLPSN ETDLDSDSDI SGRESDAPVD AYSCDHFRMF DFKVRRCARG RSHDWTECPY  120
AHPGEKARRR DPRKYHYSGT ACPDFRKGHC KKGDTCEFAH GVFECWLHPA RYRTQPCKDG  180
TSCKRRVCFF AHTPEQLRVL PQQSPRGGAN SLNSAESYDG SPLRQAIEAA AASCVKTMPF  240
MSSPPEDSPD VSPPMSPMGR TMSRSLGSSS INEMVVSLRN LQLGKVKSLP SSWNVQVGGS  300
SGFGSPVSSG FGSPGSSAFG SPRMSMLRPG FCSLPSTPTR VPARSGIGYL DFCEEEPAME  360
RVESGRGLRA RMLEKLREEN SLGRVDPGPN CTGAPDVGWV SELIMRTVPE WGEKDGSLTL  420
KPKSSWKNLX ITLFCASVFG ETEAVGCVLS ENSRIYVFLG GIIYEIKEKV DKFKDAKSQL  480
AVVCNFYSVV MVVWEVHQFW WKDWVKWKLV EAPFVGKFGE SLLWIRASCH AASPFRPKSR  540
GT
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.146670.0bud| fruit| leaf| root| stem
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028943738.10.0zinc finger CCCH domain-containing protein 20-like
SwissprotQ9M0G21e-130C3H49_ARATH; Zinc finger CCCH domain-containing protein 49
TrEMBLA0A498KFN90.0A0A498KFN9_MALDO; Uncharacterized protein
STRINGXP_008337620.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20563176
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G19810.11e-125C3H family protein
Publications ? help Back to Top
  1. Dokládal L, et al.
    cDNA Library Screening Identifies Protein Interactors Potentially Involved in Non-Telomeric Roles of Arabidopsis Telomerase.
    Front Plant Sci, 2015. 6: p. 985
    [PMID:26617625]
  2. Min JH, et al.
    Arabidopsis Basic Helix-Loop-Helix 34 (bHLH34) Is Involved in Glucose Signaling through Binding to a GAGA Cis-Element.
    Front Plant Sci, 2017. 8: p. 2100
    [PMID:29321786]