PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000167705
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family CAMTA
Protein Properties Length: 943aa    MW: 107108 Da    PI: 6.8009
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000167705genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1165.11.1e-51751913118
           CG-1   3 ke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqrr 97 
                    +e k+rwl+++ei+aiL n++ ++++ ++ + pksg+++L++rk++r+frkDG++wkkkkdgktv+E+he+LKvg+ e +++yYah+e+ ptf rr
  MDP0000167705  75 EEaKSRWLRPNEIHAILYNHKYFTIHVKPVNLPKSGTIVLFDRKMLRNFRKDGHNWKKKKDGKTVKEAHEHLKVGNEERVHVYYAHGEDSPTFVRR 170
                    4559******************************************************************************************** PP

           CG-1  98 cywlLeeelekivlvhylevk 118
                    cywlL+++le+ivlvhy+e++
  MDP0000167705 171 CYWLLDKSLEHIVLVHYRETQ 191
                    ******************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143777.36270196IPR005559CG-1 DNA-binding domain
SMARTSM010762.0E-7673191IPR005559CG-1 DNA-binding domain
PfamPF038597.0E-4676189IPR005559CG-1 DNA-binding domain
Gene3DG3DSA:2.60.40.102.6E-4411503IPR013783Immunoglobulin-like fold
SuperFamilySSF812965.46E-14413500IPR014756Immunoglobulin E-set
CDDcd002041.64E-12526660No hitNo description
Gene3DG3DSA:1.25.40.202.2E-16550663IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484035.29E-16563663IPR020683Ankyrin repeat-containing domain
PfamPF127964.5E-7563630IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029715.167568633IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5008811.621601633IPR002110Ankyrin repeat
SMARTSM002489.2E-6601630IPR002110Ankyrin repeat
SuperFamilySSF525408.14E-6713815IPR027417P-loop containing nucleoside triphosphate hydrolase
PROSITE profilePS500967.309749775IPR000048IQ motif, EF-hand binding site
SMARTSM0001521764786IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500966.54765794IPR000048IQ motif, EF-hand binding site
SMARTSM000150.022787809IPR000048IQ motif, EF-hand binding site
PROSITE profilePS5009610.164788812IPR000048IQ motif, EF-hand binding site
PfamPF006128.5E-4789809IPR000048IQ motif, EF-hand binding site
SMARTSM0001537867889IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500967.876868897IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 943 aa     Download sequence    Send to blast
MENQLVGSEI HGFHTMQESE FFIGLSLFES NLHVLRKQEL GAWNSTQKVL SSESXSEFCT  60
NKSYKDXLDV PTIMEEAKSR WLRPNEIHAI LYNHKYFTIH VKPVNLPKSG TIVLFDRKML  120
RNFRKDGHNW KKKKDGKTVK EAHEHLKVGN EERVHVYYAH GEDSPTFVRR CYWLLDKSLE  180
HIVLVHYRET QEVVQGSPVT PVNSNSSSVS DPSAPWFLSE ELDSGANNAY CAGENELPEL  240
GDRLTVNNHE QRLHDINTLE WEELLVTNDS XEKPDNISGY DQQNQVVGNG SNSGGASNLS  300
AEISSIGNLT NPTTESESIP FNLPGSHVET VGGEVNSNAQ RRDSIAKEDK TVLDTNGLHS  360
QDSFGRWINE IMTDSQPSVE DPVLGSSLSA AQNSFASPAM DHLQSSVPQQ IFNITDISPT  420
WAFSNEKTKI LITGFLHKEF FHLAKSDLLC VCGDVCLRAE IIQTGVYRCF VPPHLPRIVN  480
LFMSIDGHKP ISQVLNFEYR APVLSDTVVS SEDNKWEEFQ LMKAIEENKT PLPLAKDSLF  540
ELILRNRLKD WLLEKVVEVS KTKEYDAHGQ GVIHLCAILE YTWAVRLFSW SGLSLDFRDK  600
RGWTALHWAA YCGREKMVAV LLSAGAKPNL VTDPTKDNPG GSNAADLAFM KGHDGLAAYL  660
SEXALVEQFK DMRMAGNASG SLEIRSNYAA NSENLSEEEL YLKDTLAAYR TAADAAARIQ  720
AAFRENSLKQ KTKAIQYSIP EAEARGIIAA LKIQHAFRNY EAKKKIKAAA HIQYRFRTWK  780
MRQEFLSLRR QAIKIQAAFR GFQVRRQYRK VLWSVGVLEK AVLRWRFKRR GLRGLKVAPA  840
EVSADXNPES DTEEDFYRAS RKQAEERIER SVVRVQAMFR SKKAQQEYSR MKMAHNEATV  900
SDLVWTFFQX YITILQIHKP XNSFYLPQLE FDDFLDPDAI MDN
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.165400.0root| stem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, stems, leaves, pollen, top of sepals and siliques. {ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:14581622}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator (PubMed:14581622). Binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved in response to cold. Contributes together with CAMTA3 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:28351986). {ECO:0000250|UniProtKB:Q8GSA7, ECO:0000269|PubMed:14581622, ECO:0000269|PubMed:28351986, ECO:0000305|PubMed:11925432}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat shock, UVB, wounding, abscisic acid, H(2)O(2) and salicylic acid. {ECO:0000269|PubMed:12218065}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028951238.10.0calmodulin-binding transcription activator 5 isoform X1
SwissprotO234630.0CMTA5_ARATH; Calmodulin-binding transcription activator 5
TrEMBLA0A498HK700.0A0A498HK70_MALDO; Uncharacterized protein
STRINGXP_008368335.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF42883459
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16150.10.0calmodulin binding;transcription regulators
Publications ? help Back to Top
  1. Ye J, et al.
    Arabidopsis formin3 directs the formation of actin cables and polarized growth in pollen tubes.
    Plant Cell, 2009. 21(12): p. 3868-84
    [PMID:20023198]
  2. Kidokoro S, et al.
    Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature.
    Plant Cell, 2017. 29(4): p. 760-774
    [PMID:28351986]
  3. Lan Y,Liu X,Fu Y,Huang S
    Arabidopsis class I formins control membrane-originated actin polymerization at pollen tube tips.
    PLoS Genet., 2018. 14(11): p. e1007789
    [PMID:30418966]