PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000167580 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | LBD | ||||||||
Protein Properties | Length: 189aa MW: 21705.7 Da PI: 9.2596 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 61.8 | 1.9e-19 | 139 | 185 | 1 | 47 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllk 47 +CaaCk+lrr+C+++C+++pyf ++p+kfa vhk+FGasnv+k+l MDP0000167580 139 PCAACKLLRRRCSQECPFSPYFSPHEPQKFASVHKVFGASNVSKMLM 185 7********************************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 16.19 | 138 | 189 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 3.9E-19 | 139 | 185 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 189 aa Download sequence Send to blast |
MFDRFKFXLN HMGLLVLAIF KYKLWFSYGD RYKISFSEQD TDTGFFITAP YFILPSFLQS 60 LSFSFSNSTS PSLPWESMPG CPEKVVLYVS SQFCLCISAS RERFDEVGKK FXRETDASHY 120 QMGRRHMLGP PGTLNTITPC AACKLLRRRC SQECPFSPYF SPHEPQKFAS VHKVFGASNV 180 SKMLMVIKL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 4e-18 | 131 | 184 | 3 | 56 | LOB family transfactor Ramosa2.1 |
5ly0_B | 4e-18 | 131 | 184 | 3 | 56 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2298 | 34 | 86 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G40470.1 | 3e-48 | LOB domain-containing protein 15 |
Link Out ? help Back to Top | |
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Phytozome | MDP0000167580 |