PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000167286
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family TALE
Protein Properties Length: 527aa    MW: 58931.9 Da    PI: 6.7483
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000167286genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox22.81.5e-073864192154
                    HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
       Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                    k +yp++e++++L +++gL  +q+ +WF N+R +
  MDP0000167286 386 KWPYPTEEDKARLVQETGLHLKQINNWFINQRKR 419
                    469*****************************87 PP

2ELK29.61.5e-10340361122
            ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                    ELKh+L+++Y+++++++++E++
  MDP0000167286 340 ELKHELKQGYKEKIVDIREEIM 361
                    9********************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012553.5E-18175219IPR005540KNOX1
PfamPF037902.5E-16178218IPR005540KNOX1
SMARTSM012565.4E-29228283IPR005541KNOX2
PfamPF037911.7E-21232282IPR005541KNOX2
SMARTSM011881.8E-4340361IPR005539ELK domain
PROSITE profilePS512139.969340360IPR005539ELK domain
PfamPF037895.0E-7340361IPR005539ELK domain
PROSITE profilePS5007111.693360423IPR001356Homeobox domain
SMARTSM003899.5E-11362427IPR001356Homeobox domain
SuperFamilySSF466898.98E-16362425IPR009057Homeodomain-like
CDDcd000864.16E-11363424No hitNo description
Gene3DG3DSA:1.10.10.601.9E-24367424IPR009057Homeodomain-like
PfamPF059202.3E-17380419IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009416Biological Processresponse to light stimulus
GO:0009722Biological Processdetection of cytokinin stimulus
GO:0071345Biological Processcellular response to cytokine stimulus
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 527 aa     Download sequence    Send to blast
MAYHNHLSQD LPLHHFTDQT QQQHQQYQSD QTDPTSKPPE PHHPFQPAPN WLNSALLRNF  60
TNADTNPTNS NNANNNGGGA SNFLNLHVTA SDSAASQASN QWLSQSHRPI LHRNHSDVID  120
DVTVAGDSMI AAMSHDSADL KPDSNLNKSE GGVVESGIPG GGGGGDGGVM NWQNARHKAE  180
ILAHPLYEPL LSAHVACLRI ATPVDQLPRI DAQLAQSQNV VAKYSALGNG MVGDDKELDQ  240
FMRHYVLLLC SFKEQLQQHV RVHAMEAVMA CWEIEQSLQS LTGVSPGEGT GATMSDDEDD  300
QVDSDANLFD GSMEGHDSMG FGPLIPTESE RSLMERVRQE LKHELKQGYK EKIVDIREEI  360
MRKRRAGKLP GNTTSVLKAW WQSHSKWPYP TEEDKARLVQ ETGLHLKQIN NWFINQRKRN  420
WHSNPSTSTV LKSKRKRCDY KPVMSRYSTA VQSLPSSIAQ TALQQGSISD RLLKILKVEE  480
NAPGFFSMSE TWLFSNFPNV FGLQMRAYSV HTKCMYVHTC KFTFLFI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1416436RKRNWHSNPSTSTVLKSKRKR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.7930.0fruit| leaf| stem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Maximally expressed in sepals, petals and fully expanded leaves. Also expressed in other flower organs and in developing leaves. Low level expression in stem internodes.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ7867550.0DQ786755.1 Prunus persica class II knotted-like homeobox protein (Knope3L) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008394136.10.0homeobox protein knotted-1-like 3 isoform X1
SwissprotO041360.0KNAP3_MALDO; Homeobox protein knotted-1-like 3
TrEMBLA0A498HU080.0A0A498HU08_MALDO; Uncharacterized protein
STRINGXP_008394136.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF101734108
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25220.21e-178KNOTTED1-like homeobox gene 3