PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000167085
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family C3H
Protein Properties Length: 468aa    MW: 50928.7 Da    PI: 7.6201
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000167085genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH28.23.2e-09112132526
                    --SGGGGTS--TTTTT-SS-SS CS
        zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                     C+f+ + G C+yGd+CkF H+
  MDP0000167085 112 VCNFWVQ-GNCSYGDKCKFLHS 132
                    7******.*************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010310.4652349IPR000571Zinc finger, CCCH-type
SMARTSM003560.52448IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.802107134IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.01E-7108132IPR000571Zinc finger, CCCH-type
SMARTSM003561.7E-6109133IPR000571Zinc finger, CCCH-type
PfamPF006427.3E-7111132IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.6E-7111130IPR000571Zinc finger, CCCH-type
SuperFamilySSF509786.77E-44129186IPR017986WD40-repeat-containing domain
Gene3DG3DSA:2.130.10.107.7E-47131361IPR015943WD40/YVTN repeat-like-containing domain
SMARTSM003201.1E-7138177IPR001680WD40 repeat
PfamPF004001.2E-5141177IPR001680WD40 repeat
PROSITE profilePS5008214.686145186IPR001680WD40 repeat
PROSITE profilePS5029419.196145354IPR017986WD40-repeat-containing domain
PROSITE patternPS006780164178IPR019775WD40 repeat, conserved site
PRINTSPR003201.6E-5164178IPR020472G-protein beta WD-40 repeat
SMARTSM003205.6224261IPR001680WD40 repeat
SuperFamilySSF509786.77E-44231354IPR017986WD40-repeat-containing domain
SMARTSM003200.0027268305IPR001680WD40 repeat
PfamPF004000.017272305IPR001680WD40 repeat
PROSITE profilePS5008212.079275314IPR001680WD40 repeat
PRINTSPR003201.6E-5292306IPR020472G-protein beta WD-40 repeat
SMARTSM003200.0053308345IPR001680WD40 repeat
PfamPF004000.049310344IPR001680WD40 repeat
PRINTSPR003201.6E-5332346IPR020472G-protein beta WD-40 repeat
SMARTSM0032025381419IPR001680WD40 repeat
SuperFamilySSF509786.77E-44384462IPR017986WD40-repeat-containing domain
Gene3DG3DSA:2.130.10.107.7E-47394460IPR015943WD40/YVTN repeat-like-containing domain
SMARTSM003201.5422459IPR001680WD40 repeat
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 468 aa     Download sequence    Send to blast
MDVDGGGSKR VFHRLGGPQS DPSKNQKVCY HWRAGKCNRH PCPFLHRELP APPSQQGLNG  60
TTSTKRHHAF AADTDGPSSR NRGPNNFNGG TSSTWGRTGG ANRVFVRKME KVCNFWVQGN  120
CSYGDKCKFL HSWSMGDSFS LLTQLEGHQE VVSGIALSSG SDKLYTGSKD QTVRVWDCAS  180
GQCLGVINLG GEVGCMISEG PWIFVGIPEA VKVGQEESRA WNTQTNSELS LSGPVGQVYA  240
MVVGNDLLFA GTQDGSILAW KFNAVTNCFE PAASLRGHTL AVVSLVVGAN RLYSGSMDHS  300
IRVWSLETLQ CIQTLTEHTE VVMSVLCWDQ FLLSCSLDRQ LKVWVATQSG NLEATYTHTE  360
EHLIPIPGLT KNKLAMGLTF SFLKLSSLEG LITLCGMHDS EAKPVLLCAC NDNTVRIYDL  420
PSFSERGKIF SKQEIRSIQV GPGGLFFTGD GTGQVKVWKW TEPAAVTA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6g6m_A1e-171334588323Tako8
6g6n_A1e-171334588323Tako8
6g6n_B1e-171334588323Tako8
6g6n_C1e-171334588323Tako8
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008376519.10.0zinc finger CCCH domain-containing protein 63-like
SwissprotQ9FNZ20.0C3H48_ARATH; Zinc finger CCCH domain-containing protein 48
TrEMBLA0A498JHE70.0A0A498JHE7_MALDO; Uncharacterized protein
STRINGXP_008376519.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF74463343
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25440.10.0zinc finger WD40 repeat protein 1