PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000166779
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family ERF
Protein Properties Length: 483aa    MW: 54601.7 Da    PI: 7.4201
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000166779genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP245.32.2e-14206251352
            AP2   3 ykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkk 52 
                     kGVr++k +g+++AeIrdp     +  r +lg+f taeeAa+a+ + +++
  MDP0000166779 206 PKGVRRRK-WGKYAAEIRDPI----QgIRKWLGTFNTAEEAAAAYQQKKRE 251
                    59***998.**********82....36******************988776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103216.95205269IPR001471AP2/ERF domain
PRINTSPR003678.9E-7206217IPR001471AP2/ERF domain
PfamPF008471.0E-7206249IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.5E-19207253IPR001471AP2/ERF domain
SMARTSM003803.5E-15207275IPR001471AP2/ERF domain
SuperFamilySSF541711.11E-14207252IPR016177DNA-binding domain
CDDcd000181.74E-12207237No hitNo description
PRINTSPR003678.9E-7228244IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 483 aa     Download sequence    Send to blast
MTKQPFVNGG GPTLVLCRFS LVLALSACKL QKIRFFLGEN RGGWHRGYMS SRFYLSTGAP  60
KKLWKSYQPL FCMHKQISSV FSMPLKSQRQ RGFRGFKFKM PGMKTVILNQ HVSWNKLKKK  120
QPTVEENAGY MKRIRIIYND PDGTDSSSED DEEYDIEGNL FQHSKRFVSE ILVVETECES  180
SAGTNGGRIG HSTDFDDSKK SNRLLPKGVR RRKWGKYAAE IRDPIQGIRK WLGTFNTAEE  240
AAAAYQQKKR EFQTIQSQRR TKSHCENMPL SDKHEFESMQ LTEGDKHGLQ GVPLSEESQD  300
SSFCHPSPSS VLEMSGSAAL CFGLERSKEE SGVEVSGGQG TLQQPVFEEE ESIPMLPPML  360
PPLDVEQLNL GCGDNYVFSS LDQFFDGMCD IVDDGMTDIV DYPACKDKKG EATCLPPLDF  420
NFGQQDFSWI DQKLEHDKWK RLCTTNTERI DVDSQRQGSC NIGRDNNSGF GLAYSASLRR  480
RVV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1206212KGVRRRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU7324380.0GU732438.1 Malus x domestica AP2 domain class transcription factor (AP2D14) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008374750.10.0ethylene-responsive transcription factor CRF6-like isoform X1
TrEMBLA0A498JNV00.0A0A498JNV0_MALDO; Uncharacterized protein
STRINGXP_008374750.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF134512027
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68550.22e-16ERF family protein