PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000165880

Common Name

DREB2-2

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

ERF

Protein Properties

Length: 572aa MW: 62456 Da PI: 4.8984

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000165880	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	55.2	1.7e-17	79	129	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 + y+GVr++ +g+WvAeIr+p r r +lg+f ta +Aa a+++a+k+++g MDP0000165880 79 CNYRGVRQRT-WGKWVAEIREPD----RgSRLWLGTFPTAVDAALAYDEAAKAMYG 129 56***999.******82....34**********************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00018	1.35E-29	79	139	No hit	No description
Pfam	PF00847	2.4E-12	79	129	IPR001471	AP2/ERF domain
SMART	SM00380	1.3E-35	80	143	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	3.6E-29	80	138	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	21.061	80	137	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	1.96E-19	80	138	IPR016177	DNA-binding domain
PRINTS	PR00367	3.7E-9	81	92	IPR001471	AP2/ERF domain
PRINTS	PR00367	3.7E-9	103	119	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 572 aa Download sequence Send to blast
MGAYDQGVNM PSLPLDSSRK RKTRSRRDGN SVADTLEKWK EHNKQLESAT EEGKKRKVPA 60 KGSKKGCMKG KGGPENARCN YRGVRQRTWG KWVAEIREPD RGSRLWLGTF PTAVDAALAY 120 DEAAKAMYGD GARLNLPHAV NNHPSSSQET SSVATPSGSS AAATPGCSTS TSTSSLSEVC 180 ADENSKLFLD VKKEDGEGES RMYPLSGAVP QASGMVKQEV NEDFDMDYLR NNQQQPVGMV 240 KPEVNEVFDM DYLRNNQQQR GVEDHNPNGG DGFVGDYSEN FTMGELFDMD EMFDVNELLM 300 PPDDISLCNS GPEQVSRPDV GQPGMETLSS EGPSNLSYQL QYPDAKLLGS LPHMEQAPLD 360 FEYSFDFMKQ EEGSNLTSQN DQGYFNLGPS DLGLGGFTEV ELVNATEGSF DIAFRNIRMF 420 KDVGWIPPHQ LGFHGGVSLL HSFGAFRFGG SAWFGSLAHS SSWGSTWLER LGATRLVAAL 480 LGSALAWTLK FHCLDFAGDL GLSASVPLLL SCSSDLSRCS LVPVALVHRG DAGVLANLVL 540 AFVCCYCESR RLTMTLLWSR TFAMILCGLV IQ

Sequence ? help Back to Top

Protein Sequence Length: 572 aa Download sequence Send to blast

MGAYDQGVNM PSLPLDSSRK RKTRSRRDGN SVADTLEKWK EHNKQLESAT EEGKKRKVPA  60
KGSKKGCMKG KGGPENARCN YRGVRQRTWG KWVAEIREPD RGSRLWLGTF PTAVDAALAY  120
DEAAKAMYGD GARLNLPHAV NNHPSSSQET SSVATPSGSS AAATPGCSTS TSTSSLSEVC  180
ADENSKLFLD VKKEDGEGES RMYPLSGAVP QASGMVKQEV NEDFDMDYLR NNQQQPVGMV  240
KPEVNEVFDM DYLRNNQQQR GVEDHNPNGG DGFVGDYSEN FTMGELFDMD EMFDVNELLM  300
PPDDISLCNS GPEQVSRPDV GQPGMETLSS EGPSNLSYQL QYPDAKLLGS LPHMEQAPLD  360
FEYSFDFMKQ EEGSNLTSQN DQGYFNLGPS DLGLGGFTEV ELVNATEGSF DIAFRNIRMF  420
KDVGWIPPHQ LGFHGGVSLL HSFGAFRFGG SAWFGSLAHS SSWGSTWLER LGATRLVAAL  480
LGSALAWTLK FHCLDFAGDL GLSASVPLLL SCSSDLSRCS LVPVALVHRG DAGVLANLVL  540
AFVCCYCESR RLTMTLLWSR TFAMILCGLV IQ

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2gcc_A	5e-18	80	142	5	68	ATERF1
3gcc_A	5e-18	80	142	5	68	ATERF1
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	17	22	SRKRKT
2	20	27	RKTRSRRD

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Mdo.30213	0.0	bud\| fruit

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JQ669817	0.0	JQ669817.1 Malus x domestica dehydration-responsive element-binding protein (DREB2) (DREB2-2) mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001280947.1	0.0	dehydration-responsive element-binding protein 2A
TrEMBL	I1Z674	0.0	I1Z674_MALDO; Dehydration-responsive element-binding protein (DREB2) (Fragment)
STRING	XP_008369293.1	0.0	(Malus domestica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1175	34	106

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G05410.2	4e-35	DRE-binding protein 2A

Link Out ? help Back to Top
Phytozome	MDP0000165880

Publications ? help Back to Top
Zhao T,Liang D,Wang P,Liu J,Ma F Genome-wide analysis and expression profiling of the DREB transcription factor gene family in Malus under abiotic stress. Mol. Genet. Genomics, 2012. 287(5): p. 423-36 [PMID:22526429]