PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000164873

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

CAMTA

Protein Properties

Length: 882aa MW: 100046 Da PI: 7.0254

Description

CAMTA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000164873	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CG-1	165.3	1e-51	14	130	3	118
CG-1 3 ke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqrr 97 +e k+rwl+++ei+aiL n++ ++++ ++ + pksg+++L++rk++r+frkDG++wkkkkdgktv+E+he+LKvg+ e +++yYah+e+ ptf rr MDP0000164873 14 EEaKSRWLRPNEIHAILYNHKYFTIHVKPVNLPKSGTIVLFDRKMLRNFRKDGHNWKKKKDGKTVKEAHEHLKVGNEERVHVYYAHGEDSPTFVRR 109 4559****************************************************************************************** PP CG-1 98 cywlLeeelekivlvhylevk 118 cywlL+++le+ivlvhy+e++ MDP0000164873 110 CYWLLDKSLEHIVLVHYRETQ 130 ****************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51437	77.362	9	135	IPR005559	CG-1 DNA-binding domain
SMART	SM01076	2.0E-76	12	130	IPR005559	CG-1 DNA-binding domain
Pfam	PF03859	6.4E-46	15	128	IPR005559	CG-1 DNA-binding domain
Gene3D	G3DSA:2.60.40.10	2.3E-4	350	442	IPR013783	Immunoglobulin-like fold
SuperFamily	SSF81296	4.97E-14	352	439	IPR014756	Immunoglobulin E-set
CDD	cd00204	1.83E-12	465	599	No hit	No description
Gene3D	G3DSA:1.25.40.20	2.0E-16	489	602	IPR020683	Ankyrin repeat-containing domain
Pfam	PF12796	4.1E-7	502	569	IPR020683	Ankyrin repeat-containing domain
SuperFamily	SSF48403	4.82E-16	502	602	IPR020683	Ankyrin repeat-containing domain
PROSITE profile	PS50297	15.167	507	572	IPR020683	Ankyrin repeat-containing domain
PROSITE profile	PS50088	11.621	540	572	IPR002110	Ankyrin repeat
SMART	SM00248	9.2E-6	540	569	IPR002110	Ankyrin repeat
PROSITE profile	PS50096	7.309	688	714	IPR000048	IQ motif, EF-hand binding site
SMART	SM00015	21	703	725	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	6.54	704	733	IPR000048	IQ motif, EF-hand binding site
SMART	SM00015	0.022	726	748	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	10.164	727	751	IPR000048	IQ motif, EF-hand binding site
Pfam	PF00612	7.8E-4	728	748	IPR000048	IQ motif, EF-hand binding site
SMART	SM00015	37	806	828	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	7.876	807	836	IPR000048	IQ motif, EF-hand binding site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 882 aa Download sequence Send to blast
MLLPGYLDVP TIMEEAKSRW LRPNEIHAIL YNHKYFTIHV KPVNLPKSGT IVLFDRKMLR 60 NFRKDGHNWK KKKDGKTVKE AHEHLKVGNE ERVHVYYAHG EDSPTFVRRC YWLLDKSLEH 120 IVLVHYRETQ EVVQGSPVTP VNSNSSSVSD PSAPWFLSEE LDSGANNAYC AGENELPELG 180 DRLTVNNHEQ RLHDINTLEW EELLVTNDSX EKPDNISGYD QQNQVVGNGS NSGGASNLSA 240 EISSIGNLTN PTTESESIPF NLPGSHVETV GGEVNSNAQR RDSIAKEDKT VLDTNGLHSQ 300 DSFGRWINEI MTDSQPSVED PVLGSSLSAA QNSFASPAMD HLQSSVPQQI FNITDISPTW 360 AFSNEKTKIL ITGFLHKEFF HLAKSDLLCV CGDVCLRAEI IQTGVYRCFV PPHLPRIVNL 420 FMSIDGHKPI SQVLNFEYRA PVLSDTVVSS EDNKWEEFQL MKAIEENKTP LPLAKDSLFE 480 LILRNRLKDW LLEKVVEVSK TKEYDAHGQG VIHLCAILEY TWAVRLFSWS GLSLDFRDKR 540 GWTALHWAAY CGREKMVAVL LSAGAKPNLV TDPTKDNPGG SNAADLAFMK GHDGLAAYLS 600 EXALVEQFKD MRMAGNASGS LEIRSNYAAN SENLSEEELY LKDTLAAYRT AADAAARIQA 660 AFRENSLKQK TKAIQYSIPE AEARGIIAAL KIQHAFRNYE AKKKIKAAAH IQYRFRTWKM 720 RQEFLSLRRQ AIKIQAAFRG FQVRRQYRKV LWSVGVLEKA VLRWRFKRRG LRGLKVAPAE 780 VSADXNPESD TEEDFYRASR KQAEERIERS VVRVQAMFRS KKAQQEYSRM KMAHNEATVS 840 DLVWTFFQGY ITILQIHKPX NSFYLPQLEF DDFLDPDAIM DN

Sequence ? help Back to Top

Protein Sequence Length: 882 aa Download sequence Send to blast

MLLPGYLDVP TIMEEAKSRW LRPNEIHAIL YNHKYFTIHV KPVNLPKSGT IVLFDRKMLR  60
NFRKDGHNWK KKKDGKTVKE AHEHLKVGNE ERVHVYYAHG EDSPTFVRRC YWLLDKSLEH  120
IVLVHYRETQ EVVQGSPVTP VNSNSSSVSD PSAPWFLSEE LDSGANNAYC AGENELPELG  180
DRLTVNNHEQ RLHDINTLEW EELLVTNDSX EKPDNISGYD QQNQVVGNGS NSGGASNLSA  240
EISSIGNLTN PTTESESIPF NLPGSHVETV GGEVNSNAQR RDSIAKEDKT VLDTNGLHSQ  300
DSFGRWINEI MTDSQPSVED PVLGSSLSAA QNSFASPAMD HLQSSVPQQI FNITDISPTW  360
AFSNEKTKIL ITGFLHKEFF HLAKSDLLCV CGDVCLRAEI IQTGVYRCFV PPHLPRIVNL  420
FMSIDGHKPI SQVLNFEYRA PVLSDTVVSS EDNKWEEFQL MKAIEENKTP LPLAKDSLFE  480
LILRNRLKDW LLEKVVEVSK TKEYDAHGQG VIHLCAILEY TWAVRLFSWS GLSLDFRDKR  540
GWTALHWAAY CGREKMVAVL LSAGAKPNLV TDPTKDNPGG SNAADLAFMK GHDGLAAYLS  600
EXALVEQFKD MRMAGNASGS LEIRSNYAAN SENLSEEELY LKDTLAAYRT AADAAARIQA  660
AFRENSLKQK TKAIQYSIPE AEARGIIAAL KIQHAFRNYE AKKKIKAAAH IQYRFRTWKM  720
RQEFLSLRRQ AIKIQAAFRG FQVRRQYRKV LWSVGVLEKA VLRWRFKRRG LRGLKVAPAE  780
VSADXNPESD TEEDFYRASR KQAEERIERS VVRVQAMFRS KKAQQEYSRM KMAHNEATVS  840
DLVWTFFQGY ITILQIHKPX NSFYLPQLEF DDFLDPDAIM DN

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Mdo.16540	0.0	root\| stem

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in roots, stems, leaves, pollen, top of sepals and siliques. {ECO:0000269\|PubMed:12218065, ECO:0000269\|PubMed:14581622}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator (PubMed:14581622). Binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved in response to cold. Contributes together with CAMTA3 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:28351986). {ECO:0000250\|UniProtKB:Q8GSA7, ECO:0000269\|PubMed:14581622, ECO:0000269\|PubMed:28351986, ECO:0000305\|PubMed:11925432}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By heat shock, UVB, wounding, abscisic acid, H(2)O(2) and salicylic acid. {ECO:0000269\|PubMed:12218065}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028951238.1	0.0	calmodulin-binding transcription activator 5 isoform X1
Swissprot	O23463	0.0	CMTA5_ARATH; Calmodulin-binding transcription activator 5
TrEMBL	A0A498HK70	0.0	A0A498HK70_MALDO; Uncharacterized protein
STRING	XP_008368341.1	0.0	(Malus domestica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4288	34	59

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G16150.1	0.0	calmodulin binding;transcription regulators

Link Out ? help Back to Top
Phytozome	MDP0000164873

Publications ? help Back to Top
Ye J, et al. Arabidopsis formin3 directs the formation of actin cables and polarized growth in pollen tubes. Plant Cell, 2009. 21(12): p. 3868-84 [PMID:20023198] Kidokoro S, et al. Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature. Plant Cell, 2017. 29(4): p. 760-774 [PMID:28351986] Lan Y,Liu X,Fu Y,Huang S Arabidopsis class I formins control membrane-originated actin polymerization at pollen tube tips. PLoS Genet., 2018. 14(11): p. e1007789 [PMID:30418966]