PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000164621
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family C3H
Protein Properties Length: 351aa    MW: 40617.4 Da    PI: 8.9904
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000164621genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.54.6e-08151175226
                    -S---SGGGGTS--TTTTT-SS-SS CS
        zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                    + ++C +++rtG+C y +rC+++H+
  MDP0000164621 151 GXPNCVYYMRTGFCGYXGRCQYNHP 175
                    6799********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003565.774101IPR000571Zinc finger, CCCH-type
PROSITE profilePS501038.79374102IPR000571Zinc finger, CCCH-type
SMARTSM003564.4E-4149176IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010310.596149177IPR000571Zinc finger, CCCH-type
PfamPF006425.6E-5151175IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.83E-5153177IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 351 aa     Download sequence    Send to blast
PRVWLCIYFA LTYLHVCAFA XQPWGKIVNI SGTRRGVRRC LLSDNQLLRE AMTGGSSIRA  60
IWILNSLDAV VLSRECVQPC TFYLQNGQCK FGFTWKFDHR VQTMRYNLSA SSLVDMPVVQ  120
YPVGFLLATL APSSSSLDLR PRSESXPERP GXPNCVYYMR TGFCGYXGRC QYNHPXDRGA  180
VVFLSLYLKL DDCXFAEKAG EKNGTFLEFI RHSRGSCKSY RGLPRESGGN LYXRLTLKYL  240
QDLMQMKNQL PTFVIAFTIR EHFGVNFICT CKLIDKMFVM NYELLFYPRY HLDQSSLLCQ  300
KPLLAKPMVM DVYQEYILVT YRPFDVHIFH VKLFGEISLL PXFTEYGTIY R
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.122114e-92fruit
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47850.24e-15C3H family protein