PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000163095 | ||||||||
Common Name | HD1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 289aa MW: 31926.7 Da PI: 8.2168 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 58.9 | 8.5e-19 | 144 | 198 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ ++tkeq Lee F+++++++ ++++ LA++l+L rqV vWFqNrRa+ k MDP0000163095 144 RKKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRARTK 198 788899***********************************************98 PP | |||||||
2 | HD-ZIP_I/II | 124.8 | 3.8e-40 | 144 | 233 | 1 | 91 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 +kk+rl+keq++lLEesF+++++L+p++K++lar+L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lk+++++l++en+rL+ke +eL+ +l MDP0000163095 144 RKKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTDENRRLQKELQELK-AL 233 69*************************************************************************************9.44 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 3.7E-18 | 130 | 198 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 4.6E-19 | 133 | 201 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.718 | 140 | 200 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.0E-15 | 142 | 204 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 3.3E-16 | 144 | 198 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.87E-17 | 144 | 201 | No hit | No description |
PROSITE pattern | PS00027 | 0 | 175 | 198 | IPR017970 | Homeobox, conserved site |
SMART | SM00340 | 9.7E-25 | 200 | 243 | IPR003106 | Leucine zipper, homeobox-associated |
Pfam | PF02183 | 5.6E-10 | 200 | 234 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009735 | Biological Process | response to cytokinin | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 289 aa Download sequence Send to blast |
MGFDDHACNT GLVLGLGLTS SAPQESCNLT KFAKNNIKPS LNSAPTSGAF EPSLTLGLSG 60 EPYHQQTVAS NIYKVGNSSQ DEAIDLYRQA AAASSPHSHS AVSNSFSSGR VVKRERDLSS 120 EEVDVDEKVS SRVSDEDEDG SNARKKLRLT KEQSALLEES FKQHSTLNPK QKQALARQLN 180 LRPRQVEVWF QNRRARTKLK QTEVDCEFLK KCCETLTDEN RRLQKELQEL KALKLNQPLY 240 MHMPTATLTM CPSCERIGGA GSEGSSKSPF SMASKPHFYN HFTNPSAAC |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 192 | 200 | RRARTKLKQ |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mdo.11480 | 0.0 | bud| cell culture| leaf |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00477 | DAP | Transfer from AT4G37790 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001280933.1 | 0.0 | homeobox-leucine zipper protein HAT22-like | ||||
Swissprot | P46604 | 1e-100 | HAT22_ARATH; Homeobox-leucine zipper protein HAT22 | ||||
TrEMBL | D9ZJ03 | 0.0 | D9ZJ03_MALDO; HD domain class transcription factor | ||||
STRING | XP_008342690.1 | 0.0 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1144 | 33 | 107 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37790.1 | 6e-84 | HD-ZIP family protein |
Link Out ? help Back to Top | |
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Phytozome | MDP0000163095 |
Entrez Gene | 103405460 |
Publications ? help Back to Top | |||
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