PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000162303

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

C3H

Protein Properties

Length: 100aa MW: 11388.5 Da PI: 9.4278

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000162303	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	29.9	9.6e-10	57	83	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C++f+rtG Ck+ ++Ck++H++ MDP0000162303 57 PGQPDCSYFSRTGDCKFKSNCKYHHPK 83 5789*********************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00356	9.1E-5	56	83	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	13.986	56	84	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	4.9E-7	58	83	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	6.93E-6	61	85	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 100 aa Download sequence Send to blast
MSKTNKSASR IYEAPAYIPE GSMPARPPYM MNNSVTXTNV YKQYPHQNQV EEFPERPGQP 60 DCSYFSRTGD CKFKSNCKYH HPKTQTAVAP HSHSVTKACR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009333889.1	4e-44	PREDICTED: zinc finger CCCH domain-containing protein 67-like
Refseq	XP_028959755.1	2e-44	zinc finger CCCH domain-containing protein 43-like
Swissprot	Q5RJC5	3e-20	C3H67_ARATH; Zinc finger CCCH domain-containing protein 67
TrEMBL	A0A498JJL4	1e-42	A0A498JJL4_MALDO; Uncharacterized protein
STRING	XP_009333889.1	1e-43	(Pyrus x bretschneideri)
STRING	XP_008346724.1	3e-44	(Malus domestica)
STRING	XP_008374334.1	7e-46	(Malus domestica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF37996	2	2

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G63260.1	1e-22	C3H family protein

Link Out ? help Back to Top
Phytozome	MDP0000162303