PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000162123

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

FAR1

Protein Properties

Length: 757aa MW: 88366.2 Da PI: 8.6587

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000162123	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	53.6	7.1e-17	56	162	1	88
FAR1 1 kfYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkk.................tekerrtraetrtgCkaklkvkkek.dgkwe 77 ++Y++Y+++ GF +r+++s+k+ +r++ it+r+fvC +gk+ +++ +k +++ ++ ++gCka++++ ++ ++kw+ MDP0000162123 56 NYYQDYGRQKGFWIRTRSSSKTrSRSDDITSRQFVCAHQGKHVSRNIVhetleenedretcetenMKKMNKNCSTVKCGCKASMRIVHDRwSNKWK 151 69***********9988887578889*********999876688999****998666666778889******99999* PP FAR1 78 vtkleleHnHe 88 ++ ++ HnH+ MDP0000162123 152 ISVFKDVHNHK 162 ********7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.9E-14	56	162	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	1.2E-34	281	375	IPR018289	MULE transposase domain
PROSITE profile	PS50966	10.002	562	598	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	2.0E-5	572	595	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	0.0019	573	600	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 757 aa Download sequence Send to blast
MAESVADFAS NSPSISPVQD TVQVENDETC IPNENSKGLK TPYVGMLFDT MEEARNYYQD 60 YGRQKGFWIR TRSSSKTRSR SDDITSRQFV CAHQGKHVSR NIVHETLEEN EDRETCETEN 120 MKKMNKNCST VKCGCKASMR IVHDRWSNKW KISVFKDVHN HKPVTPERRM KMKSNKVMPK 180 AVRVLTETFH EENLPIAKVS SIFGGTHIGF NKRDCYNHLR NVRHRQLDGG DAQSVLTYFR 240 KXQAENPHFF YAIQCDENGR ATNFFWVDAR SRMAYXYFGD VVTFDSTYRT NXYDMPFAPF 300 TXVNHHWQSI QFXCALLQDE TEVTFLWLFE TWLEAMGGRH PITIITDQDL AMKGAIAKVF 360 PNTHHRLCLW HIKKKFAKKL SHVYFKKSKF KIEMKKCTRK TYKIDDFEVK WKALMKEYGL 420 ENDEWLKSLY EMRSSWVPVY NRRIFFAGMN TTGRSEGINS FFDGFVTPTT NLREFVVKYE 480 QALKKIMERE SDEDFESEHK YRIVNEGEFL LQHAASLYTR NVFNKFKDEW SKVNRYKVEE 540 MPRDNEDHAY IVKSKLGEQE EFVVKLNAQT HKGTCECQNF KFVGILCRHL LKVFVRLDVN 600 TIPEHFILPR WKQEANKFRI MDFKSLVTND GKEESEALRL SHMCHQATKL ACTAASSNEA 660 YTIFMEAIDE LSKKLSEYSC QDATIASSTK GDTCTNIDSS VPVLLDPYIS QTKGRKKDNI 720 SSSKRRLAEY SCQDENVASS TKGDSLLLLW TLYLTYR

Sequence ? help Back to Top

Protein Sequence Length: 757 aa Download sequence Send to blast

MAESVADFAS NSPSISPVQD TVQVENDETC IPNENSKGLK TPYVGMLFDT MEEARNYYQD  60
YGRQKGFWIR TRSSSKTRSR SDDITSRQFV CAHQGKHVSR NIVHETLEEN EDRETCETEN  120
MKKMNKNCST VKCGCKASMR IVHDRWSNKW KISVFKDVHN HKPVTPERRM KMKSNKVMPK  180
AVRVLTETFH EENLPIAKVS SIFGGTHIGF NKRDCYNHLR NVRHRQLDGG DAQSVLTYFR  240
KXQAENPHFF YAIQCDENGR ATNFFWVDAR SRMAYXYFGD VVTFDSTYRT NXYDMPFAPF  300
TXVNHHWQSI QFXCALLQDE TEVTFLWLFE TWLEAMGGRH PITIITDQDL AMKGAIAKVF  360
PNTHHRLCLW HIKKKFAKKL SHVYFKKSKF KIEMKKCTRK TYKIDDFEVK WKALMKEYGL  420
ENDEWLKSLY EMRSSWVPVY NRRIFFAGMN TTGRSEGINS FFDGFVTPTT NLREFVVKYE  480
QALKKIMERE SDEDFESEHK YRIVNEGEFL LQHAASLYTR NVFNKFKDEW SKVNRYKVEE  540
MPRDNEDHAY IVKSKLGEQE EFVVKLNAQT HKGTCECQNF KFVGILCRHL LKVFVRLDVN  600
TIPEHFILPR WKQEANKFRI MDFKSLVTND GKEESEALRL SHMCHQATKL ACTAASSNEA  660
YTIFMEAIDE LSKKLSEYSC QDATIASSTK GDTCTNIDSS VPVLLDPYIS QTKGRKKDNI  720
SSSKRRLAEY SCQDENVASS TKGDSLLLLW TLYLTYR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028948914.1	0.0	protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	A0A251PRW6	0.0	A0A251PRW6_PRUPE; Uncharacterized protein
STRING	XP_008351540.1	0.0	(Malus domestica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF40	30	530

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-133	FAR1-related sequence 5

Link Out ? help Back to Top
Phytozome	MDP0000162123