PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000161881
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family WRKY
Protein Properties Length: 593aa    MW: 64852.8 Da    PI: 9.0098
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000161881genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY95.73.2e-30179238159
                    ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
           WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                    ++Dg++WrKYGqK  kg+++pr+YYrCt + +Cpv+k+v+r+++d +++++tYeg+Hnh+
  MDP0000161881 179 MNDGCQWRKYGQKIAKGNPCPRAYYRCTVSpSCPVRKQVQRNSKDMSILITTYEGSHNHP 238
                    58**************************999****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.2E-30164238IPR003657WRKY domain
SuperFamilySSF1182904.84E-26173239IPR003657WRKY domain
PROSITE profilePS5081127.99174240IPR003657WRKY domain
SMARTSM007742.5E-35179239IPR003657WRKY domain
PfamPF031068.5E-27180238IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 593 aa     Download sequence    Send to blast
MVKVREENEK LKLLLSQISR DYQYLQMHLH GLLQNEEETK KCTDASSSST ARDFTHEQNI  60
EEADDLVSLS LGRTSSSIDQ PRKDGRSQLS STNGKDDDDD DKMLHGAGLA LELGCRSEPA  120
ADQSTDNSSG GPKEDDQTEI WPPSKTLKTT RSGEDEVSQQ THLKKARVSV RARCXAPTMN  180
DGCQWRKYGQ KIAKGNPCPR AYYRCTVSPS CPVRKQVQRN SKDMSILITT YEGSHNHPLS  240
MSATAMASTT SAAASMLQSH SSTSQQGLFN SATAPISAST NLQGLNFSGT STLSQNSRLP  300
QQHFYFPNSS VSTNNSHPTI TLDLTVPTPS HFGRFPLASG SSFSSNPRYX STSFNFSSSL  360
DHNNTLQLQS PWNSISHTAS GYFNYGNYGN RINQVGSALN IGKQPIFQEH NKLYQSHVQN  420
QNASPPPPPL HHPQMSTNSI ATATKAITLN PNFQSALAAA LTSFLGNGGT SSTTGIRENH  480
KSGTIVESSS GLKLKPSVIY TMISGIRSPT GIQCLHLAKL ASCMQRHHLL MEVQADASIA  540
DAVQALSNHH ILSAPVRSPE ADTSADWRGR LLAPMVMIRY WKRSTRILTV RFF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A1e-20166239173WRKY transcription factor 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028952289.10.0probable WRKY transcription factor 61 isoform X1
RefseqXP_028952290.10.0probable WRKY transcription factor 61 isoform X1
TrEMBLA0A498HLR90.0A0A498HLR9_MALDO; Uncharacterized protein
STRINGXP_008361887.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF65034134
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G18860.12e-62WRKY DNA-binding protein 61