PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000161249
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family ERF
Protein Properties Length: 329aa    MW: 37365.9 Da    PI: 6.1474
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000161249genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.81.2e-17131181255
            AP2   2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                    +y+GVr+++ +g+++AeIrdp     k +r++lg+f+t  +Aaka++ a+ kl+g
  MDP0000161249 131 HYRGVRRRP-WGKYAAEIRDP---ArKGTRVWLGTFDTDVDAAKAYDCAAFKLRG 181
                    7********.**********8...4445**********99*************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003808.4E-36131195IPR001471AP2/ERF domain
CDDcd000189.20E-30131189No hitNo description
PROSITE profilePS5103224.526131189IPR001471AP2/ERF domain
SuperFamilySSF541711.83E-22131190IPR016177DNA-binding domain
PfamPF008472.1E-12131181IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.7E-31131190IPR001471AP2/ERF domain
PRINTSPR003676.1E-13132143IPR001471AP2/ERF domain
PRINTSPR003676.1E-13171191IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
MSTHEQDDST LXLIRQHLLX DFTFTDSFIS HLNFEITPDD ISYFEFQPVK PEYSSLSESG  60
SSSPISTPNY HSPQLSNSET KPESVNLPSM EVEPLNLSSQ CSPKRKYXTC QTSSSKDELQ  120
QVSGSGDVLX HYRGVRRRPW GKYAAEIRDP ARKGTRVWLG TFDTDVDAAK AYDCAAFKLR  180
GRKAILNFPL EAGLSEPPVN TXRKRRRSVK QEEVTETEEL ELQSWVVWEG EDIALTFTLE  240
LLTFLKPLCR LHVRPTVGAV GVDLHCGYRI ILXRHVPNFP TFIPHHLLDQ NVQVECKCHS  300
REHFVDEQVF GDTAHTAHLT XDGTASRXE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-28131196570ATERF1
3gcc_A1e-28131196570ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1202206RKRRR
2202207RKRRRS
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.304120.0leaf
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU7324430.0GU732443.1 Malus x domestica AP2 domain class transcription factor (AP2D19) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009362711.11e-146PREDICTED: ethylene-responsive transcription factor ERF107-like
TrEMBLA0A4D5XFE71e-145A0A4D5XFE7_9ROSA; Ethylene Responsive Factor ERF106
STRINGXP_008343686.11e-164(Malus domestica)
STRINGXP_008375671.11e-164(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF52573056
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G07580.12e-41ERF family protein