PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000161239 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | HB-other | ||||||||
Protein Properties | Length: 1105aa MW: 123558 Da PI: 7.9112 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 16.8 | 1.2e-05 | 66 | 122 | 1 | 57 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 +r+R ++++ ++ ++++F + +s++e +eL + g+t +qV+ +F +R + +k MDP0000161239 66 KRPRDLLNPKAIKYMQSVFSIKDSISKKESRELNALFGITVTQVRDFFNSQRSRVRK 122 799**************************************************9997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 9.896 | 63 | 123 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 5.99E-6 | 65 | 126 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 0.0012 | 65 | 127 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 1.5E-5 | 66 | 131 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 7.77E-4 | 66 | 122 | No hit | No description |
Gene3D | G3DSA:1.20.930.10 | 2.3E-6 | 222 | 311 | IPR017923 | Transcription factor IIS, N-terminal |
SuperFamily | SSF47676 | 1.07E-5 | 225 | 311 | IPR017923 | Transcription factor IIS, N-terminal |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006351 | Biological Process | transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1105 aa Download sequence Send to blast |
MEDPSAEMEI GTSPESFGKF LDSQRELFHS QIDQLQRIVG TQCKLTGVNP LSQEMAAGAL 60 SIKIGKRPRD LLNPKAIKYM QSVFSIKDSI SKKESRELNA LFGITVTQVR DFFNSQRSRV 120 RKLVQLSREK ALKSGEHKDL QDGVSTSPDS LTPSDPVPLN SVGPANVEDA PSCSTQDDAP 180 SGLDDLDKCF VEDIFNLMRK EETFSGQVKL MEWILRIQNS SVLCWFLTKG GVMILVTWLS 240 QAAVEEQTNV LLVILKVLCH LPLHKALPLH MSAVLQSVNR LRFYRTADIS NRARVLLSRW 300 SKLLAKNQAL EKPNGIKTSS DSGQDIDEVM GDESWKSNMD ISEDFLGTPF ESAENFRKVN 360 ASEPLKLLTA SSDESNKKNI LGVSSSRILN IEFRERRKVQ LVEQPGQKSA GRSVQATRTT 420 PVSQARPMSA DDIQKAKMRA QFMQSKYGKS GSSHENKELK TEGVKKLKTS QASILPVVPK 480 VPIRSNIEEP NIPATYPLKE RETPNRPETT IAPKRSMDLK EPILEKCRRI QIPWKMPPGN 540 VTVQASQLCG RLYLPHRENE WRMSFLPCDS SWVYWCPCGC SLPDKSGLAQ FSFWLVDGFF 600 GYFFMPFPFL SAEIKLDPSW SVGGGENGKE NEVQRNRNRR EKEIIYRTVQ ETPSNPKEPW 660 DIEMDYDDSL TPEIPIEQPP DVADSTETQA FPREYNPETM VVPSQGANSV ASLPPALSQI 720 NKASAAEPDL ELLAVLLKNP ELVFALTSGQ AANLSSEDTV KLLDMIKSGG AGVAGSVNGL 780 GRKMEERVEV SLPSPTPSSN PGTESPSMKQ VASSEWWLIF PWTEINLPTL RDVIVSGIPS 840 QRQAKRFMAF PHGNALLSGW KGDAGRNAFP QQMPQVSSAH RSIPPERLST PQPAVPSYSP 900 DYYPMQTPAS EMTSITKNTH FHNLSNMTVP SVWGESTSNV ERAPLSTSYN LAEMQQPLFS 960 NMARQQRQPQ PLQQQQQRFS TPTYSPNPPM GKAVPPSESW RARQDLTSNY HYLENQNQYN 1020 ASHGGHLQPH LSGPWEGYER VGSNQDFHSW SPDDDDSPSR NPGYMYGREP RTNPGRDYTS 1080 RGRNPAGYRG HTRQRGNRWP NRGGD |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mdo.22759 | 0.0 | fruit |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Accumulates prior to flowering in the vegetative shoot apical meristem and after flowering in floral meristems. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in shoot apex, root apex, leaf primordia and floral buds. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Seems to play a role in the regulation of flowering time in the autonomous flowering pathway by repressing FLOWERING LOCUS C expression. {ECO:0000269|PubMed:10363371}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008386640.1 | 0.0 | homeobox protein LUMINIDEPENDENS-like isoform X2 | ||||
Swissprot | Q38796 | 1e-169 | LUMI_ARATH; Homeobox protein LUMINIDEPENDENS | ||||
TrEMBL | M5VIN4 | 0.0 | M5VIN4_PRUPE; Uncharacterized protein | ||||
STRING | EMJ00902 | 0.0 | (Prunus persica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF9809 | 29 | 34 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G02560.2 | 1e-166 | HB-other family protein |
Link Out ? help Back to Top | |
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Phytozome | MDP0000161239 |
Publications ? help Back to Top | |||
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