PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000159531
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family GRAS
Protein Properties Length: 537aa    MW: 59262.4 Da    PI: 5.2426
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000159531genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS431.75.6e-1321675371374
           GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 
                    l+e+L +cA+a++++d++ +++l + l++++s +g+p+qRl ay++e+L ar a+s+s+++++l+++e +   s+e l+++++++ev+P++kf+++
  MDP0000159531 167 LKEVLCACAKALANNDMSTTEQLFSXLRQMVSVSGEPIQRLGAYILEGLIARXASSGSSICASLRCKEPA---SAELLSYMHILYEVCPYFKFGYM 259
                    5789*****************************************************************9...9********************** PP

           GRAS  97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledle 190
                     aN aI ea++ e+rvHiiDf++ qG QW++L+qaLa+Rp+gpp++RiTg+++++s   +   l  +g+rL+++Ae+++vpfef++ +    ++++
  MDP0000159531 260 SANGAIAEAMKDESRVHIIDFQVAQGSQWITLIQALATRPGGPPQIRITGIDDSASAyvRGGGLGVVGQRLSRLAESCKVPFEFHA-AGIFGSEVQ 354
                    *****************************************************888899999************************.78899**** PP

           GRAS 191 leeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvE 286
                    le+L ++pgEa+aVn++l+lh+++desvs++++rd++L+l kslsPkvv++veqe+++n+++Fl rf+e+l+y+sa+fds+++ lpre++eri+vE
  MDP0000159531 355 LEDLVIRPGEAIAVNFALMLHHIPDESVSSHNHRDRLLRLAKSLSPKVVTLVEQESNTNTAPFLPRFTETLSYFSAVFDSIDVALPREHRERINVE 450
                    ************************************************************************************************ PP

           GRAS 287 rellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                    +++l+reivn++acegaer+er e l+kWr+r+ +aGF+p+pls  +++++k+ll+ ++++ y++ee  g l+lgW+++pLv+ +aWr
  MDP0000159531 451 QHCLAREIVNIIACEGAERVERYEPLSKWRSRFIMAGFSPYPLSPLVNATIKTLLQSYSEK-YTLEEIGGVLYLGWMNQPLVVSCAWR 537
                    ***********************************************************65.*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098567.659141518IPR005202Transcription factor GRAS
PfamPF035142.0E-129167537IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 537 aa     Download sequence    Send to blast
MRESHKHIIP NVPRRIGEQP VEEQESYCWP SSQNVDQQAS SDEVVQGTQL SVQKVEQHCT  60
LESSSGTSGY PGRSSSSSLN FSGNGSPVSH PDVHSYQSCG SPVNQSCISN ETDGLGHKIR  120
ELENALLGND SDAFDAYKII DEVGADQIYS EAEHWEQMMM MIRGGDLKEV LCACAKALAN  180
NDMSTTEQLF SXLRQMVSVS GEPIQRLGAY ILEGLIARXA SSGSSICASL RCKEPASAEL  240
LSYMHILYEV CPYFKFGYMS ANGAIAEAMK DESRVHIIDF QVAQGSQWIT LIQALATRPG  300
GPPQIRITGI DDSASAYVRG GGLGVVGQRL SRLAESCKVP FEFHAAGIFG SEVQLEDLVI  360
RPGEAIAVNF ALMLHHIPDE SVSSHNHRDR LLRLAKSLSP KVVTLVEQES NTNTAPFLPR  420
FTETLSYFSA VFDSIDVALP REHRERINVE QHCLAREIVN IIACEGAERV ERYEPLSKWR  480
SRFIMAGFSP YPLSPLVNAT IKTLLQSYSE KYTLEEIGGV LYLGWMNQPL VVSCAWR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A7e-651715378375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.249510.0bud
Functional Description ? help Back to Top
Source Description
UniProtMay play a regulatory role in the early step of oligosaccharide elicitor response, downstream of the membrane-associated high-affinity chitin-binding protein. {ECO:0000269|PubMed:12591613}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By oligosaccharide elicitor (N-Acetylchitooligosaccharide) extracted from the rice blast fungus (M.grisea) cell wall. Strongest induction by chitin oligomer with greater degree of polymerization (heptamer). By inoculation of M.grisea in rice cell suspension culture. {ECO:0000269|PubMed:12591613}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008376441.20.0scarecrow-like protein 21
RefseqXP_017188938.20.0scarecrow-like protein 21
SwissprotQ8GVE10.0CIGR2_ORYSJ; Chitin-inducible gibberellin-responsive protein 2
TrEMBLA0A498IKQ50.0A0A498IKQ5_MALDO; Uncharacterized protein
STRINGXP_008376441.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16533497
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48150.20.0GRAS family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Day RB, et al.
    Two rice GRAS family genes responsive to N -acetylchitooligosaccharide elicitor are induced by phytoactive gibberellins: evidence for cross-talk between elicitor and gibberellin signaling in rice cells.
    Plant Mol. Biol., 2004. 54(2): p. 261-72
    [PMID:15159627]
  3. Tanabe S, et al.
    The elicitor-responsive gene for a GRAS family protein, CIGR2, suppresses cell death in rice inoculated with rice blast fungus via activation of a heat shock transcription factor, OsHsf23.
    Biosci. Biotechnol. Biochem., 2016. 80(1): p. 145-51
    [PMID:26287768]