PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000159434
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family G2-like
Protein Properties Length: 465aa    MW: 52452.9 Da    PI: 5.8211
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000159434genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like91.95.3e-29252303155
        G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                    k r+rWt+eLHe+Fveav++LGG   AtPk i++lmkv+gLt++hvkSHLQkYR+
  MDP0000159434 252 KSRMRWTQELHEAFVEAVNHLGG---ATPKGIVNLMKVEGLTIYHVKSHLQKYRT 303
                    68*******************99...89**************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF819956.8E-5188250No hitNo description
PROSITE profilePS5129412.787249306IPR017930Myb domain
SuperFamilySSF466894.03E-16250303IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.8E-27251305IPR009057Homeodomain-like
TIGRFAMsTIGR015574.1E-23252303IPR006447Myb domain, plants
PfamPF002491.5E-9254302IPR001005SANT/Myb domain
PfamPF143795.7E-20334380IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 465 aa     Download sequence    Send to blast
MSSSFPRLHX PLDDKYTNLP DSFQVSSQRE KSIYSMQLQA SSPGNLFPSA SRPNDIHISS  60
VPPCEQSSQN SPFIFKSPVD GKSLSLHRSS HSSHSPHLEV QPTALINYPE ENKDISWCPD  120
SLPXFLHFSE SVPDQNGLVD SSAGVITSEE HAGKTNWSDW DXLISFDDAL DPNWELPVDV  180
DTMDPKLTRP QVQQHPPQIQ QYQLQIQQHH PQIQQHXPQI QQHQXQIQQH QSVQAVEFRP  240
SPEPLSSVPP TKSRMRWTQE LHEAFVEAVN HLGGATPKGI VNLMKVEGLT IYHVKSHLQK  300
YRTARYKPES SEGPCEKVST PVEETNPLDV KGSMGITEAL RLQVELQKRL HEQLENQRKL  360
QLKIEEQGKY LEKIFEQQRK IKDNRVTSGS STXDDHPTPL SNIXCPXPGE DKPETSNHQH  420
DKTAISIPLE DGSQDASREA HEPECPEDPD GVEXGAQPTK RARNG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A1e-25252307260Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B1e-25252307260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A1e-25252307260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C1e-25252307260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D1e-25252307260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F1e-25252307260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H1e-25252307260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J1e-25252307260Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.230600.0bud
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028957410.10.0protein PHR1-LIKE 1 isoform X2
TrEMBLA0A498K4N50.0A0A498K4N5_MALDO; Uncharacterized protein
STRINGXP_008370755.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15123498
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04450.17e-69G2-like family protein