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Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
MDP0000159341 |
| Common Name | LAS1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
|
| Family |
GRAS |
| Protein Properties |
Length: 458aa MW: 51993.8 Da PI: 6.541 |
| Description |
GRAS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| MDP0000159341 | genome | GDR | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GRAS | 375.9 | 5.1e-115 | 57 | 457 | 1 | 373 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykal.ppsetseknsseelaal.............. 81
l++lL++cAe +s+ d+ a++l++ ls ++sp gd+++Rl++yf++AL+ rl+ + + ++ p+++ ++ s+++ ++
MDP0000159341 57 LRHLLITCAELISHLDFPSANRLISLLSSNSSPXGDSTERLTHYFVKALSFRLNTNPNYSXTTIcPMTALTTAASASASSSSnylfppmlleeedd 152
68****************************************************933322222324444443333333333367999********* PP
GRAS 82 .........klfsevsPilkfshltaNqaIleavege.ervHiiDfdisqGlQWpaLlqaLasRp.....egppslRiTgvgspesgskeeleetg 162
++++++P+++fshltaNqaIle+++++ +Hi+Dfdi++G+QWp+L+qaL +R+ ++pp+lRiT+ g+ + + l +tg
MDP0000159341 153 neetlhscyLTLNQITPFIRFSHLTANQAILESIDSShLSIHILDFDIMHGVQWPPLMQALVERSynsplHPPPTLRITATGR----DLTLLLRTG 244
*9999887556************************996789************************87777779**********....9******** PP
GRAS 163 erLakfAeelgvpfefnvl....vakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFl 254
erL +fA++lg+ f+f++l +a+ + +++++L ++++EalaVn+vl lh+l+ ++ +L+ +ksl+Pkv++v+++ea+hn++ F+
MDP0000159341 245 ERLLRFAQSLGLAFQFHPLvlnnAARPSDLISPSTLGLHQNEALAVNCVLYLHTLVTDDSRD---LLLFLQKIKSLNPKVFTVANKEANHNNPLFF 337
*******************665445567889************************9444433...458**************************** PP
GRAS 255 erflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlek.WrerleeaGFkpvplsekaakqaklllrkvk.sdg 348
+rf+eal++y a+f+slea+lp++s+er vE+ gre+++vv eg++r++rhe++e+ W+ l++aGF++v+ls +a +qaklllr ++ s+g
MDP0000159341 338 NRFVEALDHYGAVFESLEATLPPNSRERLAVEEW-XGREVKDVVGVEGEKRKQRHERYETfWEVVLRRAGFENVALSPFALSQAKLLLRLHYpSEG 432
********************************97.***********************977*********************************** PP
GRAS 349 yrveeesgslvlgWkdrpLvsvSaW 373
y++ ++s++lgW++rpL+svS+W
MDP0000159341 433 YQLRILNDSFFLGWQNRPLFSVSSW 457
************************* PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| Sequence ? help Back to Top |
| Protein Sequence Length: 458 aa
Download sequence Send
to blast |
MGSFNSSHIQ QEEKEDHQNH PNNNNISDLQ LYHHHHXVSD QPPLIMSTSP NISPTHLRHL 60
LITCAELISH LDFPSANRLI SLLSSNSSPX GDSTERLTHY FVKALSFRLN TNPNYSXTTI 120
CPMTALTTAA SASASSSSNY LFPPMLLEEE DDNEETLHSC YLTLNQITPF IRFSHLTANQ 180
AILESIDSSH LSIHILDFDI MHGVQWPPLM QALVERSYNS PLHPPPTLRI TATGRDLTLL 240
LRTGERLLRF AQSLGLAFQF HPLVLNNAAR PSDLISPSTL GLHQNEALAV NCVLYLHTLV 300
TDDSRDLLLF LQKIKSLNPK VFTVANKEAN HNNPLFFNRF VEALDHYGAV FESLEATLPP 360
NSRERLAVEE WXGREVKDVV GVEGEKRKQR HERYETFWEV VLRRAGFENV ALSPFALSQA 420
KLLLRLHYPS EGYQLRILND SFFLGWQNRP LFSVSSWH
|
| Expression --
Description ? help
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| Source |
Description |
| Uniprot | DEVELOPMENTAL STAGE: Expressed in the axils of leaf primordia and leaves from P1 to P20/22. In the axil of P1, expressed in 3 to 5 cell layers including the L1 to L3 layers of the shoot apical meristem (SAM). Then, extends from 1 or 2 cell layers in the adaxial-abaxial dimension. From P5 to P22, expression is restricted to a 1 to 2 cell-layer domain located within primordium. In the axils of older leaf primordia, expression decreases until it is no longer detectable in the axils of primordia older than P20/P22. {ECO:0000269|PubMed:12730136}. |
| Uniprot | TISSUE SPECIFICITY: Expressed in roots and flowers. {ECO:0000269|PubMed:18500650}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Probable transcription factor required for axillary (lateral) shoot meristem formation during vegetative development. Seems to act upstream of REVOLUTA. {ECO:0000269|PubMed:12730136}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | KC307959 | 0.0 | KC307959.1 Malus x domestica lateral suppressor protein (LAS1) mRNA, complete cds. |
