PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | MDP0000159269 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
|
||||||||
Family | C3H | ||||||||
Protein Properties | Length: 257aa MW: 28893.2 Da PI: 8.8261 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 35.7 | 1.5e-11 | 154 | 180 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++ ++C +++rtG+C yG+rC+++H++ MDP0000159269 154 PGVPNCVYYMRTGFCGYGGRCQYNHPR 180 5789*********************96 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 8.793 | 78 | 106 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 5.7 | 78 | 105 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.244 | 153 | 181 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 3.6E-6 | 153 | 180 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.5E-8 | 155 | 180 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.09E-6 | 157 | 181 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 5.4E-5 | 159 | 180 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 257 aa Download sequence Send to blast |
MFQDNVNVES AFGQALKVSL MLMEYQPWGK IVNISGTRRG VRRCLLSDNQ LLREAMTGGS 60 SIRAIWILNS LDAVVLSREC VQPCTFYLQN GQCKFGFTWK FDHRVQTMRY NLSASSLVDM 120 PVVQYPVGFL LATLAPSSSS LDLRPRSESC PERPGVPNCV YYMRTGFCGY GGRCQYNHPR 180 DRGAVVAAVR ATGDYPGRVG GTCMSENVGY LXLLQLFVVS LICHRPHSFP PFFERVHRES 240 TLGFLQIILP YELRPPT |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Mdo.12211 | 3e-92 | fruit |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A498JKW5 | 4e-86 | A0A498JKW5_MALDO; Uncharacterized protein | ||||
STRING | XP_008374312.1 | 1e-98 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF22451 | 4 | 4 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G47850.2 | 3e-18 | C3H family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | MDP0000159269 |