PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000159269
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family C3H
Protein Properties Length: 257aa    MW: 28893.2 Da    PI: 8.8261
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000159269genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH35.71.5e-11154180127
                    --S---SGGGGTS--TTTTT-SS-SSS CS
        zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                    ++ ++C +++rtG+C yG+rC+++H++
  MDP0000159269 154 PGVPNCVYYMRTGFCGYGGRCQYNHPR 180
                    5789*********************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501038.79378106IPR000571Zinc finger, CCCH-type
SMARTSM003565.778105IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.244153181IPR000571Zinc finger, CCCH-type
SMARTSM003563.6E-6153180IPR000571Zinc finger, CCCH-type
PfamPF006421.5E-8155180IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.09E-6157181IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.4E-5159180IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    Send to blast
MFQDNVNVES AFGQALKVSL MLMEYQPWGK IVNISGTRRG VRRCLLSDNQ LLREAMTGGS  60
SIRAIWILNS LDAVVLSREC VQPCTFYLQN GQCKFGFTWK FDHRVQTMRY NLSASSLVDM  120
PVVQYPVGFL LATLAPSSSS LDLRPRSESC PERPGVPNCV YYMRTGFCGY GGRCQYNHPR  180
DRGAVVAAVR ATGDYPGRVG GTCMSENVGY LXLLQLFVVS LICHRPHSFP PFFERVHRES  240
TLGFLQIILP YELRPPT
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.122113e-92fruit
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A498JKW54e-86A0A498JKW5_MALDO; Uncharacterized protein
STRINGXP_008374312.11e-98(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2245144
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47850.23e-18C3H family protein