PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000159122 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | LBD | ||||||||
Protein Properties | Length: 108aa MW: 11569.6 Da PI: 10.6731 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 88.1 | 1.1e-27 | 23 | 108 | 1 | 85 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqq 85 +C Ck+lrrk ++C++ pyf + + +++f ++hk+FG+snv kll ++p ++ +da+ +++yeA+ar+++Pv G+v++il+lqq MDP0000159122 23 PCGTCKFLRRKYISECIFTPYFGSVRgAARFVAMHKVFGTSNVPKLLLHIPSNRLHDAVVTITYEAQARLSNPVAGCVSTILALQQ 108 7*********************998879*******************************************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 18.277 | 22 | 108 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 7.4E-28 | 23 | 108 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 108 aa Download sequence Send to blast |
MKAAVRTTKI TGNVVGSSSG AAPCGTCKFL RRKYISECIF TPYFGSVRGA ARFVAMHKVF 60 GTSNVPKLLL HIPSNRLHDA VVTITYEAQA RLSNPVAGCV STILALQQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 4e-25 | 17 | 108 | 5 | 95 | LOB family transfactor Ramosa2.1 |
5ly0_B | 4e-25 | 17 | 108 | 5 | 95 | LOB family transfactor Ramosa2.1 |
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Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots and flowers. {ECO:0000269|PubMed:12068116}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008391783.1 | 2e-57 | LOB domain-containing protein 20 | ||||
Swissprot | Q9SRV3 | 2e-44 | LBD20_ARATH; LOB domain-containing protein 20 | ||||
TrEMBL | A0A498I2L3 | 3e-51 | A0A498I2L3_MALDO; Uncharacterized protein | ||||
STRING | XP_008391783.1 | 8e-57 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF7715 | 31 | 46 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G03760.1 | 7e-47 | LOB domain-containing protein 20 |
Link Out ? help Back to Top | |
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Phytozome | MDP0000159122 |