PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000159013
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family bHLH
Protein Properties Length: 338aa    MW: 37255.9 Da    PI: 5.5279
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000159013genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH18.53.6e-061571773555
                    TS-STCHHHHHHHHHHHHHHH CS
            HLH  35 skKlsKaeiLekAveYIksLq 55 
                    s+K +Ka++L +A+eY+k+Lq
  MDP0000159013 157 SEKTDKASMLDEAIEYLKQLQ 177
                    89******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.101.2E-7155187IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.1E-7155194IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.97E-5157181No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
MGDXYEYDRY YKNATCSSSS SQXAQPHSAX DDMSLFLQQI LVRSSSSLAS VVAQPGKAPQ  60
FLFSPSPSVG ALLPGNLEHP CHSGFFGDEI TAIDSSXAFV SAGNPNVSSS SLGASENEAD  120
EYDCESEEGL EAFVEAKSGG GRSSSKRSRA AEVHNLSEKT DKASMLDEAI EYLKQLQLQV  180
QMLSMRNGMS LHSLCLPGTL QPVQXSQMRM XLGXEIRPLH LDMTNLFNLS NQCTAANESY  240
VPDMSNVVNS ETSFGLEPSI XXHLRPFQLP ASSQAQPLIH FPLXHEYQIX RPQLVTAYVI  300
LQNFSEPQLH ARIMRMPHSR PXIRKSFLFN AFGKAFDT
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.107651e-152fruit
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU1812706e-57GU181270.1 Prunus persica ALCATRAZ/SPATULA-like protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008338329.21e-170transcription factor SPATULA isoform X1
RefseqXP_028950943.11e-170transcription factor SPATULA isoform X2
TrEMBLA0A498I0C71e-168A0A498I0C7_MALDO; Uncharacterized protein
STRINGXP_008338329.11e-172(Malus domestica)
STRINGXP_008361401.11e-172(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF22763379
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36930.15e-35bHLH family protein