PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000157124 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | WRKY | ||||||||
Protein Properties | Length: 252aa MW: 28120.5 Da PI: 4.9191 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 51.6 | 1.9e-16 | 49 | 91 | 20 | 59 |
S-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 20 fprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 rsYYrCt++ +C+++k+v+rs+edp+v+eitY+g+H+++ MDP0000157124 49 KKRSYYRCTYRntqSCWATKQVQRSDEDPTVFEITYKGKHTCS 91 57********98889**************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00774 | 8.7E-14 | 38 | 92 | IPR003657 | WRKY domain |
Pfam | PF03106 | 2.1E-14 | 48 | 90 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 1.9E-14 | 48 | 91 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 2.48E-13 | 49 | 91 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 12.415 | 51 | 88 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 252 aa Download sequence Send to blast |
MLKCGGSPQS PIRAIASAPE SLMSANEGPC CVNNNRSLQD HQDLTAVSKK RSYYRCTYRN 60 TQSCWATKQV QRSDEDPTVF EITYKGKHTC SHGGSSVPPP PSPEKQERKR HNHNNTYQQQ 120 QSQGNQMSFP TNLRVNTENL DDRENTASPF SFTSSPFGSI SDDAFLSSML DDQSLFDHFN 180 QSLLSPAAGG SNYYFELPSQ MRNIAGNEQR SESDIISANN SSTNSPIPDM DFXLEPVELD 240 PYFPFDSPGF FL |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mdo.2861 | 0.0 | root| stem |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028959531.1 | 1e-162 | LOW QUALITY PROTEIN: probable WRKY transcription factor 53 | ||||
TrEMBL | A0A498JJJ9 | 1e-162 | A0A498JJJ9_MALDO; Uncharacterized protein | ||||
STRING | XP_008343700.1 | 1e-163 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF493 | 34 | 157 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G11070.2 | 2e-22 | WRKY family protein |
Link Out ? help Back to Top | |
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Phytozome | MDP0000157124 |