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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | MDP0000156783 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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| Family | MIKC_MADS | ||||||||
| Protein Properties | Length: 338aa MW: 38175.1 Da PI: 5.9153 | ||||||||
| Description | MIKC_MADS family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | SRF-TF | 86 | 2.2e-27 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
krien rqvtfskRr g+lKKA+EL +LCdaevaviifs+tg+l+e+ss
MDP0000156783 9 KRIENANSRQVTFSKRRSGLLKKAQELAILCDAEVAVIIFSNTGRLFEFSS 59
79***********************************************96 PP
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| 2 | K-box | 67.9 | 3.3e-23 | 137 | 223 | 12 | 98 |
K-box 12 akaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98
+ +++ ++el++Lk+e+ nLq++q llG++L+ LslkeLqqLeqqL+++l ++++K++ll+eq+e+++ +e+++ en++Lr++
MDP0000156783 137 EIQKQDSKELDNLKDEYANLQKKQLXLLGKELTGLSLKELQQLEQQLNEGLLAVKERKEQLLTEQLEQSRIQEQRAVLENETLRRQA 223
44677899****************************************************************************986 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| SMART | SM00432 | 2.1E-40 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
| PROSITE profile | PS50066 | 32.394 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
| CDD | cd00265 | 1.42E-36 | 2 | 62 | No hit | No description |
| SuperFamily | SSF55455 | 9.29E-28 | 2 | 61 | IPR002100 | Transcription factor, MADS-box |
| PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
| PRINTS | PR00404 | 6.5E-29 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
| Pfam | PF00319 | 2.5E-25 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
| PRINTS | PR00404 | 6.5E-29 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
| PRINTS | PR00404 | 6.5E-29 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
| PROSITE profile | PS51297 | 12.825 | 139 | 229 | IPR002487 | Transcription factor, K-box |
| Pfam | PF01486 | 1.6E-16 | 139 | 222 | IPR002487 | Transcription factor, K-box |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
| GO:0005634 | Cellular Component | nucleus | ||||
| GO:0003677 | Molecular Function | DNA binding | ||||
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
| GO:0046983 | Molecular Function | protein dimerization activity | ||||
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 338 aa Download sequence Send to blast |
MGRGKIEIKR IENANSRQVT FSKRRSGLLK KAQELAILCD AEVAVIIFSN TGRLFEFSSA 60 GFPRNHVCLS AIFLFSGNFG QTHLGGCIYL XKQLRXVGAN ETMKLKLTVP CIMRQTLSRY 120 NKCLDSSEDA PEEGKAEIQK QDSKELDNLK DEYANLQKKQ LXLLGKELTG LSLKELQQLE 180 QQLNEGLLAV KERKEQLLTE QLEQSRIQEQ RAVLENETLR RQANNILXAI CKFYQFHVEE 240 LRCLFPQTDQ AVRSFIEYYP VEKRKCLVNR GVTSSPDLVS NFAFENGDSD TTLQLGLPSD 300 AYGKXKAPER EAQSNDSGSQ LESTDARDEG DTIESVVC |
| 3D Structure ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
| 1tqe_P | 2e-17 | 1 | 64 | 1 | 64 | Myocyte-specific enhancer factor 2B |
| 1tqe_Q | 2e-17 | 1 | 64 | 1 | 64 | Myocyte-specific enhancer factor 2B |
| 1tqe_R | 2e-17 | 1 | 64 | 1 | 64 | Myocyte-specific enhancer factor 2B |
| 1tqe_S | 2e-17 | 1 | 64 | 1 | 64 | Myocyte-specific enhancer factor 2B |
| 5f28_A | 1e-17 | 1 | 64 | 1 | 64 | MEF2C |
| 5f28_B | 1e-17 | 1 | 64 | 1 | 64 | MEF2C |
| 5f28_C | 1e-17 | 1 | 64 | 1 | 64 | MEF2C |
| 5f28_D | 1e-17 | 1 | 64 | 1 | 64 | MEF2C |
| 6c9l_A | 2e-17 | 1 | 64 | 1 | 64 | Myocyte-specific enhancer factor 2B |
| 6c9l_B | 2e-17 | 1 | 64 | 1 | 64 | Myocyte-specific enhancer factor 2B |
| 6c9l_C | 2e-17 | 1 | 64 | 1 | 64 | Myocyte-specific enhancer factor 2B |
| 6c9l_D | 2e-17 | 1 | 64 | 1 | 64 | Myocyte-specific enhancer factor 2B |
| 6c9l_E | 2e-17 | 1 | 64 | 1 | 64 | Myocyte-specific enhancer factor 2B |
| 6c9l_F | 2e-17 | 1 | 64 | 1 | 64 | Myocyte-specific enhancer factor 2B |
| Search in ModeBase | ||||||
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_008349472.2 | 1e-167 | agamous-like MADS-box protein AGL15 | ||||
| TrEMBL | A0A498KIV7 | 1e-151 | A0A498KIV7_MALDO; Uncharacterized protein | ||||
| STRING | XP_008349472.1 | 1e-165 | (Malus domestica) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Fabids | OGEF3582 | 32 | 60 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT5G13790.1 | 2e-58 | AGAMOUS-like 15 | ||||
| Link Out ? help Back to Top | |
|---|---|
| Phytozome | MDP0000156783 |
| ©2010-2022, Center
for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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