PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000156337
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family HSF
Protein Properties Length: 546aa    MW: 61127.6 Da    PI: 4.9633
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000156337genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind1011.1e-31211542102
                    HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTT....................... CS
   HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekksks....................... 74 
                    Fl+k+y++++d++++ ++sws+++nsfvv++  ef++++LpkyFkh+nf+SFvRQLn+Y  ++++ +++ +++                       
  MDP0000156337  21 FLNKTYDMVDDPSTDAVVSWSKSNNSFVVWNVPEFSRDLLPKYFKHNNFSSFVRQLNTYVGENLEGKRTLRDDrgevlldskrvekeakakellcs 116
                    9**********************************************************99999999988666899***********999999998 PP

                    ..........XTTSEEEEESXXXXXXXXXXXXXXXXXX CS
   HSF_DNA-bind  75 ..........kekiweFkhksFkkgkkellekikrkks 102
                              +++ weF+++ F +g+k+ll+++ r+k 
  MDP0000156337 117 iwllegfrkvDPDRWEFANEGFLRGQKHLLKTVSRRKP 154
                    888877765449***********************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.102.9E-351479IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004155.1E-5017152IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467854.72E-281786IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000561.2E-152144IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004472.5E-2721152IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.2E-155971IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.2E-157284IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467854.72E-28119152IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.102.9E-35122147IPR011991Winged helix-turn-helix DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009408Biological Processresponse to heat
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 546 aa     Download sequence    Send to blast
MERVEDAASV FNSANTPPPP FLNKTYDMVD DPSTDAVVSW SKSNNSFVVW NVPEFSRDLL  60
PKYFKHNNFS SFVRQLNTYV GENLEGKRTL RDDRGEVLLD SKRVEKEAKA KELLCSIWLL  120
EGFRKVDPDR WEFANEGFLR GQKHLLKTVS RRKPAHVQNH QQQPPQVQSS QVGACVEVGN  180
PGLEEEVERL KRDKNSLMQE LVRLRQQQQA TDNQLHNVGQ RMQGMEQRQQ QMMSFLAKAM  240
HSPGFLSQLV QHQNENNRLI TGSNKKRRLP RQDDEILVGN LGSKVLDGQM VKYQPSMNEA  300
AKAMLRQILK MNTSPKLEPS MINPDAFLID NVPSNATDTR NTSSRILGVT LSEVPPISAE  360
CDMPNESRFP VSCHSTGISE VQSSPFAVSN SVKETQVLEE NMLNFQQDPV IPELTRMQGI  420
VPQSNVEIPN ANFINSETGN AGYMGMSTGL DGRLPTDIDP FSPEPDADAL PDGVSSLPSI  480
NDIFWEQFLT ASPLPGDTDE ISLSSDDGVT VNQDLQLGKD NGWDKSQHMN HITEQMQLLA  540
SGSRIG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A9e-201915218120Heat shock factor protein 1
5d5u_B8e-201915227129Heat shock factor protein 1
5d5v_B8e-201915227129Heat shock factor protein 1
5d5v_D8e-201915227129Heat shock factor protein 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.162851e-62bud| leaf
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00514DAPTransfer from AT5G16820Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Not induced by heat stress. {ECO:0000269|PubMed:18064488}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB8532536e-95AB853253.1 Pyrus pyrifolia mRNA, microsatellite: TsuENH235.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008383020.10.0heat stress transcription factor A-1-like
RefseqXP_017190756.10.0heat stress transcription factor A-1-like
SwissprotQ84T611e-157HSFA1_ORYSJ; Heat stress transcription factor A-1
TrEMBLA0A498JRN80.0A0A498JRN8_MALDO; Uncharacterized protein
STRINGXP_008383020.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18433169
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16820.21e-125heat shock factor 3
Publications ? help Back to Top
  1. Chauhan H,Khurana N,Agarwal P,Khurana P
    Heat shock factors in rice (Oryza sativa L.): genome-wide expression analysis during reproductive development and abiotic stress.
    Mol. Genet. Genomics, 2011. 286(2): p. 171-87
    [PMID:21792744]