PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000156178
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family C3H
Protein Properties Length: 562aa    MW: 62975.2 Da    PI: 7.229
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000156178genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.32.4e-07137158426
                    ---SGGGGTS--TTTTT-SS-SS CS
        zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                    ++C f++  G+C+ Gd+C+F H+
  MDP0000156178 137 VPCYFYSN-GFCSKGDKCSFLHD 158
                    69**9999.*************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010310.55989115IPR000571Zinc finger, CCCH-type
SMARTSM003560.3391114IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.09E-6133158IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.817133160IPR000571Zinc finger, CCCH-type
SMARTSM003565.0E-5134159IPR000571Zinc finger, CCCH-type
PfamPF006424.6E-5137158IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.9E-5138159IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 562 aa     Download sequence    Send to blast
MEEELVKRNT DCVYFLASPL TCKKCCELGF FLCFHLLQFA LHLKDFWVLV FLKEEQDLGL  60
QLLDVSNSSV HSLLGSGIDC EFRHSKIARL NPKECWYWLA GNCLNPTCAF RHPPLDGHGG  120
TPSESSPPSV TSNKTSVPCY FYSNGFCSKG DKCSFLHDTD XNASNGKSSK TASACNEALA  180
LTSENEAAAG NGALARISES KAPAGNEXLA RTSENKAPAG NEALALNSET KASVGNDTMS  240
APRITHLNPS ETASKAIVDQ SSEDEDXDLV PEERWESSPG FDVLVDGKSD NLGCDDDQEY  300
FPTLHGEHRE LNXRFLGYDF ENPDEYVPEY PDARLLHDRD MYNDCLDTRI IFGNQGPNPV  360
YTKERMSDSM FSSKRKHMPR ELFDGDEDFL DLRDRLRRRR VTDGRSITGL SRRHESLGLF  420
GRPQRHGLGR XLHGRLASVM GNNTYESLRG NGAFSNGGIQ RGSLRHAQEF RYKKHHKERR  480
PAKQQFPWSE ISKKPFPREK RCAGQPTTFT GPKSLAQIRE EKRKAEENGG SIGVPKRARR  540
TVDFQGPKPL KEILKEKGKI PD
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1393399DRLRRRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008337404.20.0zinc finger CCCH domain-containing protein 32-like
TrEMBLA0A498HUL90.0A0A498HUL9_MALDO; Uncharacterized protein
STRINGXP_009368821.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF130921823