PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000156139
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family Trihelix
Protein Properties Length: 718aa    MW: 81155 Da    PI: 10.3507
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000156139genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix93.12.8e-29163246186
       trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                    rW++qe+laL+++r++m+ ++r+++ k+plWeevs+k+++ g++rs+k+Ckek+en+ k+++++keg+ ++++++  t+++fdql+
  MDP0000156139 163 RWPRQETLALLQIRSDMDVAFRDASVKGPLWEEVSRKLAALGYHRSAKKCKEKFENVYKYHRRTKEGRTGKSEGK--TYRFFDQLN 246
                    8********************************************************************975544..6******97 PP
2trihelix103.91.2e-32562646186
       trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                    rW+k ev+aLi++r++++++++++  k+plWee+s +mr+ g++r++k+Ckekwen+nk++kk+ke++kkr +e+s+tcpyf+ql+
  MDP0000156139 562 RWPKVEVQALIKLRTSLDSKYQENGPKGPLWEEISGAMRKLGYNRNAKRCKEKWENINKYFKKVKESNKKR-PEDSKTCPYFHQLD 646
                    8*********************************************************************8.99**********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007175.8E-4160222IPR001005SANT/Myb domain
CDDcd122031.46E-22162227No hitNo description
PROSITE profilePS500906.876162220IPR017877Myb-like domain
PfamPF138377.8E-19162247No hitNo description
SMARTSM007170.0029559621IPR001005SANT/Myb domain
PfamPF138372.0E-22561648No hitNo description
PROSITE profilePS500907.05561619IPR017877Myb-like domain
CDDcd122031.04E-27561626No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 718 aa     Download sequence    Send to blast
MILTKNFIGP FRGATNRNLS IIATICQRLI TTYVNNYYDL ERLVKSXYRK XLSNVEDYQN  60
LSTEXFHRAF GAPNRVTHKK REREDKDEGN KRRKRRSRPA GPMLGDSTSV LGSSTSRDAA  120
AVAVAAPESG GGDGSNNNSG EETFRGGHEE LSGGGERSFG GNRWPRQETL ALLQIRSDMD  180
VAFRDASVKG PLWEEVSRKL AALGYHRSAK KCKEKFENVY KYHRRTKEGR TGKSEGKTYR  240
FFDQLNAFEN QPPTPGSTST SHHHQXKPHQ PMAAAAATMT TTAMANPPPT IFHLNSSTTT  300
TSTTVPSSAA PHPTINNVYS QGIATPTLNK LTLPSSFPPT NPIVLPPPPQ PPPHQPTTAN  360
PTTNANQHQQ QQHTGFPTSF TAIPTDIISN STSSSTSSDE ELEGRAKKKR KWKEFFERLM  420
KDVIQKQEDL QKRFLETIEK REQERMVREE AWRMQEMARI KREREILAQE RSITAAKDAA  480
VMSFLQRVSE QQQNQNQNQH QSMPNQSQLL LLQPAPLPPP RKPAPPPPQA QPQQTAMNID  540
IVPKSNNNGE NDNLMMPPSS SRWPKVEVQA LIKLRTSLDS KYQENGPKGP LWEEISGAMR  600
KLGYNRNAKR CKEKWENINK YFKKVKESNK KRPEDSKTCP YFHQLDSLYR ERNKFDQNNV  660
NSTSTINSSS QFKPENSVPL MVRPEQQWPP QPPPPQQQDH QGLMMGIDHH QNQGGRSS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17895KKREREDKDEGNKRRKRR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.100180.0fruit| leaf
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds specific DNA sequence. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJQ3976461e-102JQ397646.1 Malus zumi GTL mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008358288.20.0trihelix transcription factor GT-2-like
SwissprotQ391171e-136TGT2_ARATH; Trihelix transcription factor GT-2
TrEMBLA0A498IQS20.0A0A498IQS2_MALDO; Uncharacterized protein
STRINGXP_008358288.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF37334181
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76880.18e-90Trihelix family protein