PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000156134

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

C3H

Protein Properties

Length: 2139aa MW: 235253 Da PI: 9.1682

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000156134	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	22.3	2.4e-07	2009	2030	6	27
-SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 6 CrffartGtCkyGdrCkFaHgp 27 C+ f +tGtC++G++Ck +H++ MDP0000156134 2009 CPSFEATGTCPRGPKCKLHHPR 2030 *****************99985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50103	13.15	1823	1852	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	0.057	1825	1851	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	2.6	1852	1876	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	6.803	1856	1877	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	13.216	2003	2031	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	0.0028	2003	2030	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	5.3E-5	2009	2030	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0043484	Biological Process	regulation of RNA splicing
GO:0060149	Biological Process	negative regulation of posttranscriptional gene silencing
GO:0016607	Cellular Component	nuclear speck
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 2139 aa Download sequence Send to blast
MSTGQGKIGK FRSGDPKLPY VLPRGPRFSS DPFPSRIVYH ACERKKLPTK KSKRKKQSEV 60 TGLDLIEISN ERRSTKSHKK QEEEDQRRNQ RNERYAVDGS LSVSPPPHKP QLTFEPERSR 120 TFLPLHDYPV SSPRVAHSER PRHHRLLQFE SPYVESNPVS WDSSRAFHDY DRELHKPQFR 180 VESEGSGSAR FRADYNEQLL REHRAPVDDD YNSRRRARAE PSSDGKYREL GFASSQNLNS 240 HLDSNSGGYD GRYDELRSGG RRDEVYENNQ RWVHNDREAT RELYDPFVFD EGNRGRNVLA 300 KRDYYGSESE RGSGTSNRRK QIQKKSVLLR LQTVKPSHRN GSAYFDNSGS SSHRGKGYYE 360 YSGREMGEVE KGANSLELDV SFKSNSLVAK AVGNRDVKTD SVYGRDFSNL KLSRDSENAA 420 PVRLRSSIVV ANKTSSSDKD PRQLEEEVNT SGMENRCDIE QPGSNVNGDS SGKSEVERVT 480 KGNTKGKVLQ RDGKKGVSAQ MSSLKVTKKK KVVKKVVKKV VNPRPQPKKK IDEPRAADSY 540 ICSPSAAFGT EKGETSSPSM VSDEHGTDAN SCSKSTGKTS TCNLGSSSCE EINIDQGCLT 600 VDASVQGLLK SSNFTNNVTD SLRVATCPET GCVVDVSKQI CQSGDSLSLD NVIRTESSEP 660 RLSVEGNANS GFLSSEKTMM HGDIMNVNGS GHGAETNLDI DGGIKVSYQE VMVHNIGNVD 720 AISEQPCTHQ LPTSLQIGSV EELPKAISAA ESSITVGLSS SGKTFAVCSD DGRGTTWNSD 780 KVSTNYDENI IVPNGGNADF VGTQASADGA SRLFVSCGTE RSSKIANSVG DRKSVTFKIK 840 KKRKFRTLLD SSRASNTIVE PKNVSAHENS VDTAVSSSLK DASHAEVAVS GVEKLDIGSQ 900 PDNDGVSVLR GNSSLDGICE AKLSARSDVN SDPDETSLKY IKRRKVSTSH LVGTTSQTND 960 GPADKSTSYA EAPWTNDDPT QEDEVTASSI GFLSANANLI PSQEGSTVLF VDDLAAVSAA 1020 RDALTNDGMN FEHQGVESCT IYEESVPDTS FLCPSPSRNE QKEASTQALV VNSPQLDIMD 1080 VESNLEENFG IFSTAEQVMM QGETASCSVS SEVQPPDSSN KFSCTDMESN YVSVKEKLPI 1140 ASNYLLLCAN NNEVSTTNSN DEGTEFVHDT VSDKGSPETS TDVPYLQMLP CSPSVIKISD 1200 EKAGGDQQLD LKSVVEGGSN ASAQNSSSGG TKSVMGKSVA LPLQNIKKAT HGSNLVSTES 1260 GLKNQLGQAT RGIVPGRSYS VSSTSMKTAS STHIAKPRTW HRNGNSSSSP LPVSMPLSST 1320 VPPQRQLPQR NGKFQSNSYV RKGNSLVRKP PVAALQSSHG FSSAVYQLNS SGIDGLKKNA 1380 GSDSRIDVKM PPSLMRTGEM NAPFDRPTPQ LPLAPILSTC PAISFGVRAS SPVSEPLSGE 1440 TKLDPMNSLD TKDAQTFAKD SLTISETQEN HSGSLNNLEN QNVLHDENLA PPNTKKIVNG 1500 KCTLNQLVAT SNPCDLPVHS TDKIQHSSDG YYKRRKNQLI RTSLEGHAIM PDDNLNLQLQ 1560 RVPKIVPRRT YGKKRSHKAV AKTSKIGKNS LVWTPHGTQS SNNDGGSLNH QKVVPYLFPW 1620 KRARHWRTFM QSQASSFKYS SVPTISKKLL LSRRRDTLYT KSTHGFSLKM YKVLSVGGAS 1680 LKWSKSLERQ SKEANEEATR AVAAVEKKKR EHNGAACISL GSKFRSNLSG KRIFRIGSVR 1740 YKMDPSRRTL KRISDDESSS SGVLDPEKDP KRSYVPKRLV IGNDEYLRIG NGNQLIRNPK 1800 KRTRILASER VRWSLHTARL RLAKKRKYCQ FFTRFGKCNK DDGKCPYIHD SSKVAVCTKF 1860 LKGLCSNPNC KLTHQVYRVT GLHMIYNRTL SFLKECRTVL TICKVLSGNI VLVKLLMELE 1920 NSDMLPGRHV NVNPKASTCE GFLKGYCADG NEAINLDIPD EKLLVFGVLW EGEWLDNSSL 1980 SKQRYTSFGA SKIEYISPSQ CRKKHSYVCP SFEATGTCPR GPKCKLHHPR NRAKEKKRKR 2040 SREHRNTWGR YFVSKDITVS EPRTVSGKQS AQNSDDIIVD GVADFISIDV SDEEVGETND 2100 PIQEQAAYCD SDSSELELDD LDELIKPIRL LERLKTNAS

Sequence ? help Back to Top

Protein Sequence Length: 2139 aa Download sequence Send to blast

MSTGQGKIGK FRSGDPKLPY VLPRGPRFSS DPFPSRIVYH ACERKKLPTK KSKRKKQSEV  60
TGLDLIEISN ERRSTKSHKK QEEEDQRRNQ RNERYAVDGS LSVSPPPHKP QLTFEPERSR  120
TFLPLHDYPV SSPRVAHSER PRHHRLLQFE SPYVESNPVS WDSSRAFHDY DRELHKPQFR  180
VESEGSGSAR FRADYNEQLL REHRAPVDDD YNSRRRARAE PSSDGKYREL GFASSQNLNS  240
HLDSNSGGYD GRYDELRSGG RRDEVYENNQ RWVHNDREAT RELYDPFVFD EGNRGRNVLA  300
KRDYYGSESE RGSGTSNRRK QIQKKSVLLR LQTVKPSHRN GSAYFDNSGS SSHRGKGYYE  360
YSGREMGEVE KGANSLELDV SFKSNSLVAK AVGNRDVKTD SVYGRDFSNL KLSRDSENAA  420
PVRLRSSIVV ANKTSSSDKD PRQLEEEVNT SGMENRCDIE QPGSNVNGDS SGKSEVERVT  480
KGNTKGKVLQ RDGKKGVSAQ MSSLKVTKKK KVVKKVVKKV VNPRPQPKKK IDEPRAADSY  540
ICSPSAAFGT EKGETSSPSM VSDEHGTDAN SCSKSTGKTS TCNLGSSSCE EINIDQGCLT  600
VDASVQGLLK SSNFTNNVTD SLRVATCPET GCVVDVSKQI CQSGDSLSLD NVIRTESSEP  660
RLSVEGNANS GFLSSEKTMM HGDIMNVNGS GHGAETNLDI DGGIKVSYQE VMVHNIGNVD  720
AISEQPCTHQ LPTSLQIGSV EELPKAISAA ESSITVGLSS SGKTFAVCSD DGRGTTWNSD  780
KVSTNYDENI IVPNGGNADF VGTQASADGA SRLFVSCGTE RSSKIANSVG DRKSVTFKIK  840
KKRKFRTLLD SSRASNTIVE PKNVSAHENS VDTAVSSSLK DASHAEVAVS GVEKLDIGSQ  900
PDNDGVSVLR GNSSLDGICE AKLSARSDVN SDPDETSLKY IKRRKVSTSH LVGTTSQTND  960
GPADKSTSYA EAPWTNDDPT QEDEVTASSI GFLSANANLI PSQEGSTVLF VDDLAAVSAA  1020
RDALTNDGMN FEHQGVESCT IYEESVPDTS FLCPSPSRNE QKEASTQALV VNSPQLDIMD  1080
VESNLEENFG IFSTAEQVMM QGETASCSVS SEVQPPDSSN KFSCTDMESN YVSVKEKLPI  1140
ASNYLLLCAN NNEVSTTNSN DEGTEFVHDT VSDKGSPETS TDVPYLQMLP CSPSVIKISD  1200
EKAGGDQQLD LKSVVEGGSN ASAQNSSSGG TKSVMGKSVA LPLQNIKKAT HGSNLVSTES  1260
GLKNQLGQAT RGIVPGRSYS VSSTSMKTAS STHIAKPRTW HRNGNSSSSP LPVSMPLSST  1320
VPPQRQLPQR NGKFQSNSYV RKGNSLVRKP PVAALQSSHG FSSAVYQLNS SGIDGLKKNA  1380
GSDSRIDVKM PPSLMRTGEM NAPFDRPTPQ LPLAPILSTC PAISFGVRAS SPVSEPLSGE  1440
TKLDPMNSLD TKDAQTFAKD SLTISETQEN HSGSLNNLEN QNVLHDENLA PPNTKKIVNG  1500
KCTLNQLVAT SNPCDLPVHS TDKIQHSSDG YYKRRKNQLI RTSLEGHAIM PDDNLNLQLQ  1560
RVPKIVPRRT YGKKRSHKAV AKTSKIGKNS LVWTPHGTQS SNNDGGSLNH QKVVPYLFPW  1620
KRARHWRTFM QSQASSFKYS SVPTISKKLL LSRRRDTLYT KSTHGFSLKM YKVLSVGGAS  1680
LKWSKSLERQ SKEANEEATR AVAAVEKKKR EHNGAACISL GSKFRSNLSG KRIFRIGSVR  1740
YKMDPSRRTL KRISDDESSS SGVLDPEKDP KRSYVPKRLV IGNDEYLRIG NGNQLIRNPK  1800
KRTRILASER VRWSLHTARL RLAKKRKYCQ FFTRFGKCNK DDGKCPYIHD SSKVAVCTKF  1860
LKGLCSNPNC KLTHQVYRVT GLHMIYNRTL SFLKECRTVL TICKVLSGNI VLVKLLMELE  1920
NSDMLPGRHV NVNPKASTCE GFLKGYCADG NEAINLDIPD EKLLVFGVLW EGEWLDNSSL  1980
SKQRYTSFGA SKIEYISPSQ CRKKHSYVCP SFEATGTCPR GPKCKLHHPR NRAKEKKRKR  2040
SREHRNTWGR YFVSKDITVS EPRTVSGKQS AQNSDDIIVD GVADFISIDV SDEEVGETND  2100
PIQEQAAYCD SDSSELELDD LDELIKPIRL LERLKTNAS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	43	56	RKKLPTKKSKRKKQ
2	937	943	LKYIKRR
3	1572	1576	KKRSH
4	2035	2040	KKRKRS

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028949172.1	0.0	uncharacterized protein At1g21580
TrEMBL	A0A498HPX2	0.0	A0A498HPX2_MALDO; Uncharacterized protein
STRING	XP_008337145.1	0.0	(Malus domestica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6103	10	10

Link Out ? help Back to Top
Phytozome	MDP0000156134