PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000155543

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

ERF

Protein Properties

Length: 139aa MW: 15375 Da PI: 7.5058

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000155543	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	61.6	1.7e-19	17	67	2	55
AP2 2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr ++ +g+++AeIrd + + +r++lg+f taeeAa+a+++a+ +++g MDP0000155543 17 RYRGVRKRP-WGKYAAEIRDS---NrHGARVWLGTFNTAEEAARAYDRAAYAMRG 67 6******.******4...3234***********************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51032	23.512	17	75	IPR001471	AP2/ERF domain
Pfam	PF00847	6.9E-15	17	67	IPR001471	AP2/ERF domain
SMART	SM00380	6.5E-35	17	81	IPR001471	AP2/ERF domain
CDD	cd00018	2.22E-17	17	76	No hit	No description
SuperFamily	SSF54171	5.3E-23	17	76	IPR016177	DNA-binding domain
Gene3D	G3DSA:3.30.730.10	4.0E-31	17	77	IPR001471	AP2/ERF domain
PRINTS	PR00367	8.2E-12	18	29	IPR001471	AP2/ERF domain
PRINTS	PR00367	8.2E-12	41	57	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 139 aa Download sequence Send to blast
MDSKAKDMEE KDAGEVRYRG VRKRPWGKYA AEIRDSNRHG ARVWLGTFNT AEEAARAYDR 60 AAYAMRGGLA ILNFPNEYPS ASGGSSSSSA SANFSSSSSS MAMQGRARGG QDEVLELEYL 120 DDKLLEELLD CDHQKKNKK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5wx9_A	5e-35	17	124	14	114	Ethylene-responsive transcription factor ERF096
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009339609.1	2e-60	PREDICTED: ethylene-responsive transcription factor ERF096-like
Swissprot	Q9LTC5	7e-44	ERF98_ARATH; Ethylene-responsive transcription factor ERF098
TrEMBL	A0A498HMK2	4e-97	A0A498HMK2_MALDO; Uncharacterized protein
STRING	XP_009339609.1	6e-60	(Pyrus x bretschneideri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF270	33	215

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G23220.1	2e-26	ERF family protein

Link Out ? help Back to Top
Phytozome	MDP0000155543

Publications ? help Back to Top
Van den Broeck L, et al. From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress. Mol. Syst. Biol., 2017. 13(12): p. 961 [PMID:29269383]