PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000155433
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family TCP
Protein Properties Length: 371aa    MW: 41267.1 Da    PI: 7.9093
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000155433genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP86.56.2e-27571822105
            TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt...................ssssaseceaess 78 
                     g+kdrhsk++T +g+RdRR+Rls+++a++++dLqd+L + ++sk i+WLl   ++ i++l+ +                   +            
  MDP0000155433  57 FGGKDRHSKVSTVRGLRDRRIRLSVPTAIQLYDLQDRLRLSQPSKVIDWLLGVTEQDIDKLPPLqvphgfghhqpmlnphqanN------------ 140
                    689*************************************************************66665555555444333220............ PP

            TCP  79 sssasnsssg.......................kaaksaa.kskksqksaa 105
                             +                       ++ k +  k++++q++++
  MDP0000155433 141 ---------SliapffdvnstfmeadqvdeevrDQXKGKSiKTNDEQDDQN 182
                    .........122223333333333333333333222222212222222222 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136926.32859117IPR017887Transcription factor TCP subgroup
PfamPF036341.8E-2559182IPR005333Transcription factor, TCP
Sequence ? help Back to Top
Protein Sequence    Length: 371 aa     Download sequence    Send to blast
MITNSRDKGF QAKQEGHNNN DGNNNSSFNK ASSSSTTTSR QWSGFSNPRI VRVSRAFGGK  60
DRHSKVSTVR GLRDRRIRLS VPTAIQLYDL QDRLRLSQPS KVIDWLLGVT EQDIDKLPPL  120
QVPHGFGHHQ PMLNPHQANN SLIAPFFDVN STFMEADQVD EEVRDQXKGK SIKTNDEQDD  180
QNRHDHEGNV SGQHLAQKLF PXGNHPSSIP GLLNNAMAFN YYHNYSEPST LSLAQFGSHG  240
FPQVPQTDQH RSHMMSTNAL SFSTPMASGS QLFFCPPTAT PTLFGSYPPY MTNPIVEGTS  300
TATDQPRQAS HFQFLSSSSN SQNFLANNAL MPYLHSISSS LKCFPSLVDP KQQLHLDSQN  360
NNASQPNKDV P
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A7e-1864118155Putative transcription factor PCF6
5zkt_B7e-1864118155Putative transcription factor PCF6
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008393237.20.0transcription factor TCP5-like
TrEMBLA0A498I0R00.0A0A498I0R0_MALDO; Uncharacterized protein
STRINGXP_008393237.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF93234119
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60970.17e-47TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 5