PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000155354
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family SBP
Protein Properties Length: 514aa    MW: 56472.4 Da    PI: 8.4223
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000155354genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP1291.8e-40180256278
                    -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
            SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                    CqvegC+ dls++k+yhr+h++C  hsk+p+v+v+g+e+rfCqqCsrfh lsefDe+krsCrrrL++hn+rrrk+q+
  MDP0000155354 180 CQVEGCNLDLSSVKDYHRKHRICANHSKSPKVVVDGVERRFCQQCSRFHGLSEFDENKRSCRRRLSDHNARRRKPQT 256
                    **************************************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.102.5E-32176241IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.308177254IPR004333Transcription factor, SBP-box
SuperFamilySSF1036125.49E-38179259IPR004333Transcription factor, SBP-box
PfamPF031106.5E-32180253IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0048653Biological Processanther development
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 514 aa     Download sequence    Send to blast
MEWNEKPPSP WDLENLFMYG AKVTENPKRV QPADWGIERE RGMNSESFYS TGGDGGSGVS  60
GSDFGDGSSK CSKSASVNSS VGESKKSNFN FESFEGFPKD FIDKKDSAEA EALGSSPTHE  120
VSAGSGEPLL SLKLGKRMYF EDVCAGNNHE TSSPSVISTS ISTRTKRFKS PAQSAFASHC  180
QVEGCNLDLS SVKDYHRKHR ICANHSKSPK VVVDGVERRF CQQCSRFHGL SEFDENKRSC  240
RRRLSDHNAR RRKPQTQVVR HPARLSSSLF ITDDRQQMSF AFDRGPYVYT KHASHLAWDG  300
SCNLKFTQTK DYFPNPAKAG GTARQLNFAS NETPGLITRL YQDSSRLSPS KSTAAEVLSG  360
GAEESMISFN LDATQDIHRA LSLLSTSPWV SGGSKPVPLD TSQSYHNNSP QQGMHAMTQG  420
VPVSSGDWQS QHPSLDTQAH VSHSHSNVSN HFQDLHQFKA LLPPAEFSAP NRNHNVLAMP  480
DASVRQAAGT FHKARPPTFA FETPPSTGCG NWKT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A6e-251802531184squamosa promoter binding protein-like 4
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.116990.0leaf| stem
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008389887.10.0squamosa promoter-binding-like protein 2
RefseqXP_008389888.10.0squamosa promoter-binding-like protein 2
RefseqXP_017192483.10.0squamosa promoter-binding-like protein 2
RefseqXP_028947177.10.0squamosa promoter-binding-like protein 2
RefseqXP_028947178.10.0squamosa promoter-binding-like protein 2
TrEMBLA0A498IAE70.0A0A498IAE7_MALDO; Uncharacterized protein
STRINGXP_008389887.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF46303058
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43270.36e-74squamosa promoter binding protein-like 2