PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000155328
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family ARR-B
Protein Properties Length: 670aa    MW: 72588.2 Da    PI: 6.3283
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000155328genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like88.65.9e-28233286155
        G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                    kpr++W+ eLH++Fv av+qL G +kA+Pk+ilelm+v+gLt+e+v+SHLQk+Rl
  MDP0000155328 233 KPRVVWSVELHQQFVTAVNQL-GLDKAVPKRILELMNVPGLTRENVASHLQKFRL 286
                    79*******************.********************************8 PP
2Response_reg72.91.3e-24491571109
                    EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTE CS
   Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGa 94 
                    vl+vdD+ + +++l+ +l +  y +v+++++++ al+ll+e++  +D++l D+ mp+mdG++ll++   e  +lp+i+++a g  + + + ++ Ga
  MDP0000155328  49 VLVVDDDTTCLRILELMLLRCLY-QVTTCSEATVALNLLRERKdcFDVVLSDVHMPDMDGFKLLEHVGLEM-DLPVIMMSADGRTSVVMRGIRHGA 142
                    89*********************.***************99999***********************6644.8*********************** PP

                    SEEEESS--HHHHHH CS
   Response_reg  95 kdflsKpfdpeelvk 109
                     dfl Kp++++el +
  MDP0000155328 143 CDFLIKPISEAELKN 157
                    ************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.23003.9E-4046181No hitNo description
SuperFamilySSF521724.41E-3446168IPR011006CheY-like superfamily
SMARTSM004489.0E-2947159IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011040.84848163IPR001789Signal transduction response regulator, receiver domain
PfamPF000721.4E-2149157IPR001789Signal transduction response regulator, receiver domain
CDDcd001563.72E-2650162No hitNo description
PROSITE profilePS5129410.384230289IPR017930Myb domain
Gene3DG3DSA:1.10.10.607.5E-30230291IPR009057Homeodomain-like
SuperFamilySSF466891.36E-19230290IPR009057Homeodomain-like
TIGRFAMsTIGR015573.3E-24233286IPR006447Myb domain, plants
PfamPF002494.4E-7235284IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 670 aa     Download sequence    Send to blast
MAALQRVAQS SVSTTASSYG SCKVGGGVLS PSAGIEMAVP NQFPAGLRVL VVDDDTTCLR  60
ILELMLLRCL YQVTTCSEAT VALNLLRERK DCFDVVLSDV HMPDMDGFKL LEHVGLEMDL  120
PVIMMSADGR TSVVMRGIRH GACDFLIKPI SEAELKNIWQ HVVRKKWNGS KELEHSGSLE  180
DNDPHKRGNN DFEYXSSVNE GTEVSLKGHK KRINXKEDDD GDTENDDLST SKKPRVVWSV  240
ELHQQFVTAV NQLGLDKAVP KRILELMNVP GLTRENVASH LQKFRLYLKR LSGVAQQQSG  300
IANPLCGPVD SNGKLGSLSR FDFQALAASG QIPPQTLAAL QAELLGQPAG NLVPAMDQPA  360
LLHASLQAPK RPPVEHGVPF MQPFVKSQSN VSKHFPQSVI SAEDASLGFG QWRSNSRSTV  420
APSNDHGGLS TQNSNLLMGI VPQEQRQHKR TQQQSVLTEP SRSFNVQPSC LVVPSQSSTG  480
FQAGNSPASV NQSSSFNRST VVDYSLPSDQ SNNSLNVGHI PTGNPKTSGX LGGYSGPGSX  540
CATSCLVNAD NSTSYQNSTA TFSDSRELPG FLHNTANSXG FYVDKSGEML DQGPLRNLGF  600
VGKETCIPSR FAVDDFESQM SNLNPGRIHV ESSGTLVKQE PSEDYVDNAK LGIPILHQYS  660
SSDFMSPFAD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A2e-22229292164ARR10-B
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.155130.0fruit| leaf
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028947024.10.0two-component response regulator ORR21-like isoform X1
RefseqXP_028947025.10.0two-component response regulator ORR21-like isoform X1
SwissprotA2XE311e-157ORR21_ORYSI; Two-component response regulator ORR21
SwissprotQ8H7S71e-157ORR21_ORYSJ; Two-component response regulator ORR21
TrEMBLA0A498I5Y10.0A0A498I5Y1_MALDO; Uncharacterized protein
STRINGXP_008389161.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF118082433
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16110.11e-108response regulator 2
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]