PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000155100
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family C3H
Protein Properties Length: 454aa    MW: 49577.6 Da    PI: 8.0703
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000155100genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH17.85.8e-0614261426
                   --TTTTT-SS-SS CS
        zf-CCCH 14 tCkyGdrCkFaHg 26
                   +C+yGdrCk+ H+
  MDP0000155100 14 ICQYGDRCKYLHV 26
                   7***********7 PP
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005635Cellular Componentnuclear envelope
Sequence ? help Back to Top
Protein Sequence    Length: 454 aa     Download sequence    Send to blast
MVSNLFTYCT FQTICQYGDR CKYLHVVQQQ HKSNPFGFGS DQQHKSNLFG FGSDQQGKSN  60
PYGFGVQNNS QTKGAADFGP KQSQNKPFEN KWSRFSSATA AAAPSSQKSD KQAQTTNHTC  120
TDPESCRSII VGDFKHERPL WKLTCYGHWK NSPCDIAGDI SYEELRAAAY DDANRGLNLQ  180
SIVERERSLL NTKLLEFENL CKPHTALPNS TLASQNPSPS ASPNGFLQTA QNSVAPSVSS  240
FTQLGTSLNT GFGPRQFLNV SSNFKTVTSV GSQFPASTHG NGFPSNMGLI NTGIIRPQTN  300
PFATLAVSQI PSATTGQSPI VGQSTTEVEF VTNMQTEKIS GNTSIWLKKI WSPGEIPEED  360
PPEALVELLQ HRCHIHILQK REGKKVIFPT PSIFFLFFEL SLVLPFLQAE SVTAANASLL  420
CCSQPSPFDI LRLQFAAAHT LSPPPSASST SVKV
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.222581e-165leaf
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008380621.10.0zinc finger CCCH domain-containing protein 16
TrEMBLA0A498K2B10.0A0A498K2B1_MALDO; Uncharacterized protein
STRINGXP_008380621.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF46002333
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75340.25e-62C3H family protein