PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000152821
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family M-type_MADS
Protein Properties Length: 478aa    MW: 54111 Da    PI: 6.625
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000152821genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF885.1e-28142191150
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
         SRF-TF   1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 
                    krien++nrqvtfskRrng++KKA+ELSvLCd++va+iifss+g+l  +s
  MDP0000152821 142 KRIENTTNRQVTFSKRRNGLIKKAYELSVLCDVDVALIIFSSSGRLSLFS 191
                    79*******************************************98776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.2E-37134193IPR002100Transcription factor, MADS-box
PROSITE profilePS5006630.473134194IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.05E-29135210IPR002100Transcription factor, MADS-box
CDDcd002658.03E-38135211No hitNo description
PRINTSPR004041.8E-26136156IPR002100Transcription factor, MADS-box
PROSITE patternPS003500136190IPR002100Transcription factor, MADS-box
PfamPF003192.5E-25143188IPR002100Transcription factor, MADS-box
PRINTSPR004041.8E-26156171IPR002100Transcription factor, MADS-box
PRINTSPR004041.8E-26171192IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 478 aa     Download sequence    Send to blast
MARPSAVTHL HLLCDQDSVS SREDDDELKE EEIVDDQDSV SSKPPKGIXL QSHTXXHSWT  60
FWGYGLILFG CPRHQKCQIK VIHNARQQIL GLKFKKDVIG DTNMQRCVVG VSDNCWLRKN  120
XPRHLCENLR TLNMGRVKLQ IKRIENTTNR QVTFSKRRNG LIKKAYELSV LCDVDVALII  180
FSSSGRLSLF SGNKSIEEIL ARYINLPANR RGRFSKAFLV NCGGKLIKPI KQPGLGSLLV  240
YVLHPAYPMS GTDSDQLEEI QQDIVCCKSK LEEMGNRLSV DSRIFEGEDL SEIRTLHEAE  300
YREQILEETL KRLRVRKQVL EEYDSYATIL QLPTATTNIH ELVTGSPHNI LVDWLLQGDP  360
QVQIVNFLNS NGFLPLRDQP AESXFDAIAF QSALVSGQNR SVDEHRSTGN GLEDDNNSLQ  420
RQELGQVIDV NLSAWKDFYP TENEHFPAAS SGGRGLYMSS QFNPPPSILH PNQDQNQL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3mu6_A1e-17135203168Myocyte-specific enhancer factor 2A
3mu6_B1e-17135203168Myocyte-specific enhancer factor 2A
3mu6_C1e-17135203168Myocyte-specific enhancer factor 2A
3mu6_D1e-17135203168Myocyte-specific enhancer factor 2A
6bz1_A2e-17134219185MEF2 CHIMERA
6bz1_B2e-17134219185MEF2 CHIMERA
6bz1_C2e-17134219185MEF2 CHIMERA
6bz1_D2e-17134219185MEF2 CHIMERA
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009354141.10.0PREDICTED: agamous-like MADS-box protein AGL104 isoform X2
TrEMBLA0A498J9060.0A0A498J906_MALDO; Uncharacterized protein
STRINGXP_009354138.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF136651922
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22130.18e-26AGAMOUS-like 104