PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000152670
Common NameSCL5
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family GRAS
Protein Properties Length: 551aa    MW: 61949.3 Da    PI: 6.8567
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000152670genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS4441e-1351755451374
           GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 
                    l+++L+ +A+av+++dl +aq++  +l++++s +g+p+qRl ay++e+L ar a+s+s++ykal+++e +    se l+++++++ev+P++kf+++
  MDP0000152670 175 LKQVLIFFAKAVADNDLLMAQWMKDELRQMVSVSGEPIQRLGAYLLEGLVARKASSGSNIYKALRCKEPA---RSELLSYMHILYEVCPYFKFGYM 267
                    5789*****************************************************************9...899******************** PP

           GRAS  97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledle 190
                     aN aI ea++ e+rvHiiDf+i+qG QW++L+qa+asRp+gpp++RiTg++++ s   +   l+ +g+ L+k+Ae+++vpfef++ +a +  d++
  MDP0000152670 268 SANGAIAEAMKDENRVHIIDFQIGQGSQWITLIQAFASRPGGPPHIRITGIDDSMSAyaRGGGLNIVGKALSKLAESFKVPFEFHA-AAMSGCDVQ 362
                    *****************************************************888789999************************.8999***** PP

           GRAS 191 leeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvE 286
                    l +L v+pgEalaVn++++lh+++desvs++++rd++L+lvkslsPkvv++veqe+++n++ F  rf+e+l+yy+a+f+s++++lpr+++eri+vE
  MDP0000152670 363 LGHLGVRPGEALAVNFAFMLHHMPDESVSTQNHRDRLLRLVKSLSPKVVTLVEQESNTNTAAFYPRFVETLNYYTAMFESIDVTLPRDHKERINVE 458
                    ************************************************************************************************ PP

           GRAS 287 rellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                    +++l+re+vn++aceg er+erhe l+kWr r+ +aGF+p+pls+ +++++k+ll++++++ yr+ee++g+l+lgWk+r Lv+ +aWr
  MDP0000152670 459 QHCLAREVVNIIACEGIERVERHELLGKWRLRFAMAGFTPYPLSSLVNATIKTLLENYSDK-YRLEERDGALYLGWKNRDLVASCAWR 545
                    ***********************************************************55.*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098568.259149526IPR005202Transcription factor GRAS
PfamPF035143.5E-133175545IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 551 aa     Download sequence    Send to blast
MQASKQQRSS GMSNRLHYQP IQEVEAYCLP RFQTLDPQLH YNESSQSTHL PMQSFHYCTL  60
ESSWSNGSYT IYNSPSNVSF SPSGSPMSQQ DSHSYPSERY HSPDQTYSSP ISGSCITDDA  120
PDFKYKLKQL ETVMLGPDSN ILDNYCINFP NGASNTLPDT DSLGQIMESI SKKDLKQVLI  180
FFAKAVADND LLMAQWMKDE LRQMVSVSGE PIQRLGAYLL EGLVARKASS GSNIYKALRC  240
KEPARSELLS YMHILYEVCP YFKFGYMSAN GAIAEAMKDE NRVHIIDFQI GQGSQWITLI  300
QAFASRPGGP PHIRITGIDD SMSAYARGGG LNIVGKALSK LAESFKVPFE FHAAAMSGCD  360
VQLGHLGVRP GEALAVNFAF MLHHMPDESV STQNHRDRLL RLVKSLSPKV VTLVEQESNT  420
NTAAFYPRFV ETLNYYTAMF ESIDVTLPRD HKERINVEQH CLAREVVNII ACEGIERVER  480
HELLGKWRLR FAMAGFTPYP LSSLVNATIK TLLENYSDKY RLEERDGALY LGWKNRDLVA  540
SCAWRCKPST N
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A6e-5918354427378Protein SCARECROW
5b3h_A5e-5918354426377Protein SCARECROW
5b3h_D5e-5918354426377Protein SCARECROW
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.85230.0bud| fruit| leaf
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in phytochrome A (phyA) signal transduction. {ECO:0000269|PubMed:10817761}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001280993.10.0scarecrow-like transcription factor PAT1
RefseqXP_008342180.10.0scarecrow-like transcription factor PAT1 isoform X1
RefseqXP_008342182.10.0scarecrow-like transcription factor PAT1 isoform X1
SwissprotQ9LDL70.0PAT1_ARATH; Scarecrow-like transcription factor PAT1
TrEMBLD9ZJB70.0D9ZJB7_MALDO; SCL domain class transcription factor
STRINGXP_008342180.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16533497
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48150.20.0GRAS family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Heyman J, et al.
    The heterodimeric transcription factor complex ERF115-PAT1 grants regeneration competence.
    Nat Plants, 2016. 2(11): p. 16165
    [PMID:27797356]