PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000152511

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

BES1

Protein Properties

Length: 691aa MW: 77340.6 Da PI: 6.4634

Description

BES1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000152511	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF822	136.1	3.7e-42	59	196	1	132
DUF822 1 ggsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyr.kgskpl..eeaeaagssas...asp 90 gg++r ++++E+E++k+RER+RRai+a+i+aGLR++Gny+l++raD+n+V+ AL+reAGwvv +DGtt++ k++ p ++aa++s+s +sp MDP0000152511 59 GGARRCRPMEEKERTKLRERQRRAITARILAGLRRHGNYNLRVRADINDVVXALAREAGWVVLPDGTTFPsKSQGPRlaGVNSAAVTSSSsqiVSP 154 6899***************************************************************955555557733444444444124677 PP DUF822 91 esslqsslkssalaspvesysaspksssfpspssldsislas 132 ++ ++ ++s +sp e ++ +k + ps s +d s+a MDP0000152511 155 RTPAXLKGVTSGYQSPGELNASNTKGVYLPSLSPYDLPSSAX 196 777778888999******************9999887664 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05687	2.4E-37	61	190	IPR008540	BES1/BZR1 plant transcription factor, N-terminal
SuperFamily	SSF51445	4.04E-169	240	677	IPR017853	Glycoside hydrolase superfamily
Gene3D	G3DSA:3.20.20.80	1.7E-188	242	677	IPR013781	Glycoside hydrolase, catalytic domain
Pfam	PF01373	5.1E-96	249	667	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	5.8E-67	280	294	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	5.8E-67	301	319	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	5.8E-67	323	344	IPR001554	Glycoside hydrolase, family 14
PROSITE pattern	PS00506	0	327	335	IPR018238	Glycoside hydrolase, family 14, conserved site
PRINTS	PR00842	4.6E-8	406	415	IPR001371	Glycoside hydrolase, family 14B, plant
PRINTS	PR00750	5.8E-67	416	438	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	5.8E-67	487	506	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	5.8E-67	521	537	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	5.8E-67	538	549	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	5.8E-67	556	579	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00842	4.6E-8	559	569	IPR001371	Glycoside hydrolase, family 14B, plant
PRINTS	PR00750	5.8E-67	596	618	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00842	4.6E-8	647	661	IPR001371	Glycoside hydrolase, family 14B, plant
PRINTS	PR00842	4.6E-8	662	676	IPR001371	Glycoside hydrolase, family 14B, plant

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0000272	Biological Process	polysaccharide catabolic process
GO:0016161	Molecular Function	beta-amylase activity

Sequence ? help Back to Top
Protein Sequence Length: 691 aa Download sequence Send to blast
MEKGLQKLIT SEEDDDEEME MDVKEEDGVD GEMPTISNNN NRLQQXHQFQ EQVGTXGGGG 60 ARRCRPMEEK ERTKLRERQR RAITARILAG LRRHGNYNLR VRADINDVVX ALAREAGWVV 120 LPDGTTFPSK SQGPRLAGVN SAAVTSSSSQ IVSPRTPAXL KGVTSGYQSP GELNASNTKG 180 VYLPSLSPYD LPSSAXSQGS SIVGDGAGQT ESHPLIGGSM DNVGNKQIVD IPLKLQERDF 240 SSTAYIPVYV MLPLGVINMK CELVDPDGLL KQLRVLKSVS VDGIMVDCWW GIVEGHAPQE 300 YNWNGYKRLF XMVCELKLKL QVVMSFHECG GNVGDDVCVP LPHWVXEIGR SNPDIFFTDR 360 EGRXNPECLS WGIDKERXLR GRTAVEVYFD CMRSFRVEFD KYFKNGNISM IQVGLGPCGE 420 LRYPSCPVKH GWRYPGVGEF QDQYLLKSLR KAAEARGHSF WGRGPDNAGS YNSRPNXTGF 480 FSDGGXYDGY YGRFFLNWYS XVLVXHGDRV LSLAKLAFDG TCIAAKXSGL HWWYKTXSHA 540 AELTAGFYNP CNRDGYSPIA TMLKKHEATL SLACTELHML DQHEDFQEAL GDSEGLFWQV 600 LNAAWDVCLP VSSENALACH DRISYNKILD NAKPLTXPDG RHLSSFTYLR LSPLLMERDN 660 FMEFERFVKR MHGKTAFTTA LFLIQFDALL I

Sequence ? help Back to Top

Protein Sequence Length: 691 aa Download sequence Send to blast

MEKGLQKLIT SEEDDDEEME MDVKEEDGVD GEMPTISNNN NRLQQXHQFQ EQVGTXGGGG  60
ARRCRPMEEK ERTKLRERQR RAITARILAG LRRHGNYNLR VRADINDVVX ALAREAGWVV  120
LPDGTTFPSK SQGPRLAGVN SAAVTSSSSQ IVSPRTPAXL KGVTSGYQSP GELNASNTKG  180
VYLPSLSPYD LPSSAXSQGS SIVGDGAGQT ESHPLIGGSM DNVGNKQIVD IPLKLQERDF  240
SSTAYIPVYV MLPLGVINMK CELVDPDGLL KQLRVLKSVS VDGIMVDCWW GIVEGHAPQE  300
YNWNGYKRLF XMVCELKLKL QVVMSFHECG GNVGDDVCVP LPHWVXEIGR SNPDIFFTDR  360
EGRXNPECLS WGIDKERXLR GRTAVEVYFD CMRSFRVEFD KYFKNGNISM IQVGLGPCGE  420
LRYPSCPVKH GWRYPGVGEF QDQYLLKSLR KAAEARGHSF WGRGPDNAGS YNSRPNXTGF  480
FSDGGXYDGY YGRFFLNWYS XVLVXHGDRV LSLAKLAFDG TCIAAKXSGL HWWYKTXSHA  540
AELTAGFYNP CNRDGYSPIA TMLKKHEATL SLACTELHML DQHEDFQEAL GDSEGLFWQV  600
LNAAWDVCLP VSSENALACH DRISYNKILD NAKPLTXPDG RHLSSFTYLR LSPLLMERDN  660
FMEFERFVKR MHGKTAFTTA LFLIQFDALL I

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wds_A	1e-141	245	677	11	447	Beta-amylase
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Mdo.14909	1e-135	stem

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009340422.1	0.0	PREDICTED: LOW QUALITY PROTEIN: beta-amylase 7
Swissprot	O80831	0.0	BAM7_ARATH; Beta-amylase 7
TrEMBL	A0A498KK02	0.0	A0A498KK02_MALDO; Beta-amylase
STRING	XP_009340422.1	0.0	(Pyrus x bretschneideri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF10883	33	39

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45880.1	0.0	beta-amylase 7

Link Out ? help Back to Top
Phytozome	MDP0000152511

Publications ? help Back to Top
Soyk S, et al. The Enzyme-Like Domain of Arabidopsis Nuclear β-Amylases Is Critical for DNA Sequence Recognition and Transcriptional Activation. Plant Cell, 2014. 26(4): p. 1746-1763 [PMID:24748042]