PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000151848
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family DBB
Protein Properties Length: 252aa    MW: 27984.4 Da    PI: 5.6448
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000151848genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box21.84e-072754431
       zf-B_box  4 rkCpeHeekelqlfCedCqqllCedCll 31
                   + C+ +e+  ++lfC  ++  lC++C +
  MDP0000151848 27 TLCDVCESAAAILFCAADEAALCRSCDE 54
                   68************************87 PP
2zf-B_box26.21.6e-0896135237
       zf-B_box   2 eerkCpeHeekelqlfCedCqqllCedClleeHkg....H 37 
                    + ++C+ +e+ ++ ++Ce +++ lC +C +  H g    H
  MDP0000151848  96 DVPCCDICENAPAFFYCEVDGSSLCLQCDMIVHVGgkrtH 135
                    5789**************************9995544455 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003360.00612491IPR000315B-box-type zinc finger
PROSITE profilePS501198.8162454IPR000315B-box-type zinc finger
CDDcd000212.02E-52756No hitNo description
SMARTSM003362.2E-995140IPR000315B-box-type zinc finger
PROSITE profilePS501198.74595140IPR000315B-box-type zinc finger
PfamPF006431.4E-696129IPR000315B-box-type zinc finger
CDDcd000212.21E-7100128No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0010100Biological Processnegative regulation of photomorphogenesis
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    Send to blast
MVMKPENQWL SGGGRRDENK WEDSMRTLCD VCESAAAILF CAADEAALCR SCDEKVVGFF  60
GQAEYSTLIY TNGEGVHLCN KLANRHVRVG IATPSDVPCC DICENAPAFF YCEVDGSSLC  120
LQCDMIVHVG GKRTHGRYLL FRQRVEFPGN KLGRSEELGL QPLDQKKVQR DQNQQPDLKT  180
GENQHNHNVS PTAVLYNNID GDYKMDNTPI DLNSRPQRIR GQASTNQEQG VGVLNGVNDE  240
SASVVPVQSF RK
Functional Description ? help Back to Top
Source Description
UniProtActs as negative regulator of seedling photomorphogenesis. {ECO:0000269|PubMed:18540109}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008391588.11e-150B-box zinc finger protein 18 isoform X1
RefseqXP_008391589.11e-150B-box zinc finger protein 18 isoform X1
SwissprotC0SVM53e-70BBX19_ARATH; B-box zinc finger protein 19
TrEMBLA0A498IYJ91e-139A0A498IYJ9_MALDO; Uncharacterized protein
STRINGXP_008391588.11e-149(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF27343370
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38960.11e-72DBB family protein