PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000151784 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | LBD | ||||||||
Protein Properties | Length: 230aa MW: 25013 Da PI: 6.2184 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 133.6 | 7.5e-42 | 75 | 174 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelal 96 +CaaCk+lrr+C+++Cvlapyfp ++p kf ++h++FGasn++kll+++pe++r da+ss+vyeA+ar+rdPvyG++g i +lq+q+ +l+a+la+ MDP0000151784 75 PCAACKILRRRCVEKCVLAPYFPPTEPLKFTVAHRVFGASNIIKLLQEIPESHRADAVSSMVYEANARIRDPVYGCAGAICQLQKQVGELQAQLAQ 170 7**********************************************************************************************9 PP DUF260 97 lkee 100 +++e MDP0000151784 171 AQAE 174 9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 25.832 | 74 | 175 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 5.9E-42 | 75 | 172 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 230 aa Download sequence Send to blast |
MEFIAXTTTT PTSPPPFSHS PSSSISSPST APFPSPXSHH LSNYSSPHAA NSNIATNPFP 60 TYPSPPPPPP VVLSPCAACK ILRRRCVEKC VLAPYFPPTE PLKFTVAHRV FGASNIIKLL 120 QEIPESHRAD AVSSMVYEAN ARIRDPVYGC AGAICQLQKQ VGELQAQLAQ AQAELVNMQC 180 EQGNLIALIC MDMTQSKEQA ILQQQLSSCN DTICFPDENN LGTTWEPLWT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 2e-42 | 67 | 185 | 3 | 122 | LOB family transfactor Ramosa2.1 |
5ly0_B | 2e-42 | 67 | 185 | 3 | 122 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269|PubMed:12068116}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008369390.2 | 1e-167 | LOB domain-containing protein 1-like | ||||
Swissprot | Q9LQR0 | 2e-72 | LBD1_ARATH; LOB domain-containing protein 1 | ||||
TrEMBL | A0A498KNK6 | 1e-116 | A0A498KNK6_MALDO; Uncharacterized protein | ||||
STRING | XP_008354087.1 | 1e-167 | (Malus domestica) | ||||
STRING | XP_008369390.1 | 1e-167 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1303 | 34 | 106 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07900.1 | 1e-61 | LOB domain-containing protein 1 |
Link Out ? help Back to Top | |
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Phytozome | MDP0000151784 |