PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000151619
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family C3H
Protein Properties Length: 268aa    MW: 29588 Da    PI: 3.8802
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000151619genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH40.83.7e-13207229426
                    ---SGGGGTS--TTTTT-SS-SS CS
        zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                    e C+++++tG Ck+G++CkF+H+
  MDP0000151619 207 EDCSYYLKTGSCKFGSNCKFNHP 229
                    89********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902296.41E-7202231IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.094203231IPR000571Zinc finger, CCCH-type
SMARTSM003562.0E-6203230IPR000571Zinc finger, CCCH-type
PfamPF006421.0E-10207229IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.4E-6209229IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 268 aa     Download sequence    Send to blast
MALSEATSVV PPNPETPSTN HAHSDQGSLP SSPDPDPTPS DLDHAVLDEL HKLDLKEPVX  60
EGDGEPDELQ ELDSTEKVEE DGVGELQNVD LKEEEDGVGE LQKVDLKEEE DGAGELQKLD  120
LXEEEEGGEG EEEEEKSSGE REVEILNGEE NERQSEQSYQ SDGGGGGEGW GGNQGWEEDG  180
GEVEEKKAEE TQESNRRYQY PVRPEAEDCS YYLKTGSCKF GSNCKFNHPV SRKTNQVPRE  240
RVKDESAENP SQTECKVIIV VILGNFYI
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.130551e-119fruit| leaf| root
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028959756.11e-175zinc finger CCCH domain-containing protein 67-like
TrEMBLA0A498JJL41e-165A0A498JJL4_MALDO; Uncharacterized protein
STRINGXP_008352008.10.0(Malus domestica)
STRINGXP_008374336.10.0(Malus domestica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63260.15e-20C3H family protein