PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000151428 | ||||||||
Common Name | DREB5-1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | ERF | ||||||||
Protein Properties | Length: 201aa MW: 22363.4 Da PI: 5.1022 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 56.7 | 6e-18 | 14 | 63 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +ykGVr +k +g+Wv+eIr+p gk++r++lg++ +e+Aa+a++aa++ l+g MDP0000151428 14 RYKGVRKRK-WGKWVSEIREP---GKKTRIWLGSYEAPEMAAAAYDAAALHLKG 63 6*****999.**********8...557***********************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 7.06E-19 | 13 | 72 | No hit | No description |
Pfam | PF00847 | 1.2E-11 | 14 | 63 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.352 | 14 | 71 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.07E-20 | 14 | 71 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 3.7E-29 | 14 | 73 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 8.7E-32 | 14 | 77 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.4E-11 | 15 | 26 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.4E-11 | 53 | 73 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 201 aa Download sequence Send to blast |
MEXQAADCRV SPARYKGVRK RKWGKWVSEI REPGKKTRIW LGSYEAPEMA AAAYDAAALH 60 LKGCGAALNF PEMADSLPRP ASSSAMDVQL AAQEAALRVR RQQLPMEAFP KEEXGDSSRG 120 LSSAPVTVGL SPSQIQAINE SPLDSPKMWM QYMCRAHXHE APSSLGGDLW DTDNSSPNKY 180 YEGDVESMDY EDMQHWSIWD P |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 3e-15 | 15 | 76 | 6 | 68 | ATERF1 |
3gcc_A | 3e-15 | 15 | 76 | 6 | 68 | ATERF1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 15 | 21 | KGVRKRK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JQ669820 | 0.0 | JQ669820.1 Malus x domestica dehydration-responsive element-binding protein (DREB5) (DREB5-1) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008368126.2 | 1e-144 | ethylene-responsive transcription factor ERF022-like | ||||
Swissprot | Q9C9I2 | 3e-46 | ERF21_ARATH; Ethylene-responsive transcription factor ERF021 | ||||
Swissprot | Q9LQ28 | 3e-46 | ERF22_ARATH; Ethylene-responsive transcription factor ERF022 | ||||
TrEMBL | A0A3Q9NC24 | 1e-143 | A0A3Q9NC24_MALDO; DREB transcription factor | ||||
TrEMBL | A0A3T0CIY0 | 1e-143 | A0A3T0CIY0_9ROSA; DREB transcription factor | ||||
STRING | XP_008339089.1 | 1e-144 | (Malus domestica) | ||||
STRING | XP_008368126.1 | 1e-144 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1777 | 31 | 91 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G33760.1 | 1e-47 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | MDP0000151428 |
Publications ? help Back to Top | |||
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