PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000151190

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

G2-like

Protein Properties

Length: 311aa MW: 33781.3 Da PI: 6.881

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000151190	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	105.4	3.3e-33	40	94	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprlrWt +LHerFv+av+qLGGs kAtPk+i+++m+vkgLtl h+kSHLQkYRl MDP0000151190 40 KPRLRWTADLHERFVDAVTQLGGSSKATPKAIMRTMNVKGLTLFHLKSHLQKYRL 94 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	9.5E-32	37	95	IPR009057	Homeodomain-like
PROSITE profile	PS51294	9.499	37	97	IPR017930	Myb domain
TIGRFAMs	TIGR01557	1.4E-23	40	95	IPR006447	Myb domain, plants
SuperFamily	SSF46689	1.74E-16	40	96	IPR009057	Homeodomain-like
Pfam	PF00249	2.0E-7	42	93	IPR001005	SANT/Myb domain
Pfam	PF14379	3.4E-15	135	180	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 311 aa Download sequence Send to blast
MFPVLMHEGG GMVGEEDMQM QGHSHRGGGD PCLVLTSDPK PRLRWTADLH ERFVDAVTQL 60 GGSSKATPKA IMRTMNVKGL TLFHLKSHLQ KYRLGKQSGK DMADISKDAS YLLESPATGN 120 TSPNLPTSDL NEGYEVKEAL RAQMEVQSKL HVQVEAEKHL QIRQDAERRY MAMLERACKM 180 LADQFIGGSV TDTDGHKCHE SGNKNLKGTS LDKLGFYSSQ STDAVGVHGI GEELPICIHT 240 QRADCSTESC LTSHESPGGL TLEGSPGGGK KRMLSLDTGN GSLIWGEAKV RTQEISVAPI 300 DPPHGIARYG M

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	5e-19	40	96	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	5e-19	40	96	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	5e-19	40	96	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	5e-19	40	96	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
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Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Mdo.14465	0.0	leaf

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator (PubMed:26586833). Acts redundantly with PHR1 as a key component of the central regulatory system controlling transcriptional responses to Pi starvation (PubMed:26586833). Binds in a sequence-specific manner to phosphate starvation-regulated promoters (PubMed:26586833). {ECO:0000269\|PubMed:26586833}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in roots by low Pi. {ECO:0000269\|PubMed:26586833}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KT893405	0.0	KT893405.1 Prunus persica cultivar Jinliuzaohong Myb family transcription factor APL (APL) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008384329.1	0.0	protein PHR1-LIKE 3-like isoform X2
Swissprot	Q94A57	1e-63	PHL2_ARATH; Protein PHR1-LIKE 2
TrEMBL	A0A498JUF5	0.0	A0A498JUF5_MALDO; Uncharacterized protein
STRING	XP_008384328.1	0.0	(Malus domestica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6618	33	49

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24120.1	6e-66	G2-like family protein

Link Out ? help Back to Top
Phytozome	MDP0000151190

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]