PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000151144

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

GRAS

Protein Properties

Length: 799aa MW: 87057.2 Da PI: 6.4751

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000151144	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	309.5	7.7e-95	440	798	2	374
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlt 97 +++L+++Ae +++g+ laq +Larl+++ sp g+p+ R+a+yf+eA + l+ ++ ++ ++s+ s+ + + ++ a+k f e+sP+++f+++t MDP0000151144 440 IDQLFNAAELIETGNPVLAQGILARLNHQLSPIGKPFSRAAFYFKEAXQLLLHINT----SSNSSSALSPFSLIFKIGAYKSFTEISPVVQFANFT 531 689******************************************999998722....2333444444559******************* PP GRAS 98 aNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledlelee 193 +NqaIleaveg +rvH+iDfdi++G+QW++++q+ a R++g+ sl++T++ s++++++ e++ t+e+L++fA+el++ fe +++ ++l++ + MDP0000151144 532 CNQAILEAVEGFKRVHVIDFDIGYGGQWASFMQEVALRNGGASSLKMTAFISSSAHDEFEVSFTRENLKHFASELNLAFELELVSLESLNS-GSWG 626 *************************************************99*************************974444444.4788 PP GRAS 194 LrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErel 289 L ++ + +aV + l + ++l++++ l+ +L++vk+lsP++vv ++ +d+++ +F +++++al+ ys l++s++a + ++ +k+Er l MDP0000151144 627 LPLHASDGVAVAVNLPIGSFLSNPLLLPL----ILRFVKQLSPTIVVSLDRGSDRTDVPFPHQIIQALHSYSGLLESIDAV-NINPDALQKIERYL 717 88888888888888888999977777777....*****************************************665.45779999** PP GRAS 290 lgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 l++ i+++v+ ++ + ++ +Wr + ++GF+p+++s+++++qa++l++++++ g++ve+++ slvl+W+++ L+s+SaWr MDP0000151144 718 LQPGIEKIVTGRHHS----PKRTPSWRTLFLSSGFSPLTFSNFTESQAECLVQRTPVGGFHVEKKQSSLVLCWQRKDLISASAWR 798 *****999888....99999**********************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	43.791	413	778	IPR005202	Transcription factor GRAS
Pfam	PF03514	2.7E-92	440	798	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 799 aa Download sequence Send to blast
MVPKVGVLSP EACLLQMQKL FLQQQKATRT AEAASAAAKS AFGKTGDFWM KAMPLPFEEF 60 QGKGVLDFSS VSSSSAAAAS DSFLSPPPPP PQKWIHRHHS SKENCYVGST EPTSVLDTRR 120 SPSPSTSSST LSSSHGSGAS GGSTDTTTAA GVENPSQTPL EEQKCGPPLG MEDWESVLSE 180 SPGQDQSILR LIMSDIEDPS FGLNTLLQSS SGSHHHHQNL EFGVGGFQDV VDQGGGYGGG 240 FELDNHSGSL VSPSLHASFG PDFSFSNNAS NVEAQSSNGR PNPAMFSASM SNPFPVSLSS 300 GMFQQQQNMG LDEKPQILTP QMVINQNQTQ FTQNSAMFMP LTDAQLQEHH LLSPPPSKRL 360 NSGGFGPGYL VQRVPFLNPG QELLVRAQQQ QQQLQFLPQX LQRQRXTMPM AKEKMMSXAE 420 GGKEMMNQNQ RQQQLQQAVI DQLFNAAELI ETGNPVLAQG ILARLNHQLS PIGKPFSRAA 480 FYFKEAXQLL LHINTSSNSS SALSPFSLIF KIGAYKSFTE ISPVVQFANF TCNQAILEAV 540 EGFKRVHVID FDIGYGGQWA SFMQEVALRN GGASSLKMTA FISSSAHDEF EVSFTRENLK 600 HFASELNLAF ELELVSLESL NSGSWGLPLH ASDGVAVAVN LPIGSFLSNP LLLPLILRFV 660 KQLSPTIVVS LDRGSDRTDV PFPHQIIQAL HSYSGLLESI DAVNINPDAL QKIERYLLQP 720 GIEKIVTGRH HSPKRTPSWR TLFLSSGFSP LTFSNFTESQ AECLVQRTPV GGFHVEKKQS 780 SLVLCWQRKD LISASAWRC

Sequence ? help Back to Top

Protein Sequence Length: 799 aa Download sequence Send to blast

MVPKVGVLSP EACLLQMQKL FLQQQKATRT AEAASAAAKS AFGKTGDFWM KAMPLPFEEF  60
QGKGVLDFSS VSSSSAAAAS DSFLSPPPPP PQKWIHRHHS SKENCYVGST EPTSVLDTRR  120
SPSPSTSSST LSSSHGSGAS GGSTDTTTAA GVENPSQTPL EEQKCGPPLG MEDWESVLSE  180
SPGQDQSILR LIMSDIEDPS FGLNTLLQSS SGSHHHHQNL EFGVGGFQDV VDQGGGYGGG  240
FELDNHSGSL VSPSLHASFG PDFSFSNNAS NVEAQSSNGR PNPAMFSASM SNPFPVSLSS  300
GMFQQQQNMG LDEKPQILTP QMVINQNQTQ FTQNSAMFMP LTDAQLQEHH LLSPPPSKRL  360
NSGGFGPGYL VQRVPFLNPG QELLVRAQQQ QQQLQFLPQX LQRQRXTMPM AKEKMMSXAE  420
GGKEMMNQNQ RQQQLQQAVI DQLFNAAELI ETGNPVLAQG ILARLNHQLS PIGKPFSRAA  480
FYFKEAXQLL LHINTSSNSS SALSPFSLIF KIGAYKSFTE ISPVVQFANF TCNQAILEAV  540
EGFKRVHVID FDIGYGGQWA SFMQEVALRN GGASSLKMTA FISSSAHDEF EVSFTRENLK  600
HFASELNLAF ELELVSLESL NSGSWGLPLH ASDGVAVAVN LPIGSFLSNP LLLPLILRFV  660
KQLSPTIVVS LDRGSDRTDV PFPHQIIQAL HSYSGLLESI DAVNINPDAL QKIERYLLQP  720
GIEKIVTGRH HSPKRTPSWR TLFLSSGFSP LTFSNFTESQ AECLVQRTPV GGFHVEKKQS  780
SLVLCWQRKD LISASAWRC

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	2e-29	454	798	18	375	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Mdo.22175	0.0	leaf

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008371269.2	0.0	scarecrow-like protein 6
TrEMBL	A0A498KF99	0.0	A0A498KF99_MALDO; Uncharacterized protein
STRING	XP_008371269.1	0.0	(Malus domestica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3183	31	70

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00150.1	1e-124	GRAS family protein

Link Out ? help Back to Top
Phytozome	MDP0000151144