PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000150936
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family C2H2
Protein Properties Length: 515aa    MW: 57002.1 Da    PI: 9.5728
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000150936genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.21.5e-0578100123
                    EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                    ++C++C+k F r  nL+ H r H
  MDP0000150936  78 FVCEICNKGFQRDQNLQLHRRGH 100
                    89*******************88 PP
2zf-C2H211.50.00093155177123
                    EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                    +kC +C+k +  +s+ k H +t+
  MDP0000150936 155 WKCDKCSKIYAVQSDWKAHSKTC 177
                    58*****************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.03E-677100No hitNo description
Gene3DG3DSA:3.30.160.601.7E-577100IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF121718.2E-578100IPR022755Zinc finger, double-stranded RNA binding
PROSITE profilePS5015710.94978100IPR007087Zinc finger, C2H2
SMARTSM003550.01778100IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028080100IPR007087Zinc finger, C2H2
SuperFamilySSF576672.03E-6150175No hitNo description
SMARTSM00355180155175IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 515 aa     Download sequence    Send to blast
MFPISMSNST SLSEEGNSVS SDFAAALNPL LLSTNISPHQ HDQPPNKIKK KRSLPGNPDP  60
DAEVIALSPK TLLATNRFVC EICNKGFQRD QNLQLHRRGH NLPWKLKQRN SKDQIRKRAY  120
VCPEPSCVHH HPSRALGDLT GIKKHFCRKH GEKKWKCDKC SKIYAVQSDW KAHSKTCGTR  180
EYRCDCGTLF SRXQRVIMKT DESAKNICCC PPSSVAFFFL INYTCPNNLF VVFHLRRSRI  240
KQMKDSFITH RAFCDALAEE SARLSANQFA TASITAATIK PQISLFPFPT HQQQHFTNPN  300
PPLPPFTTIS LTQWXPPXPH QNPNPSPNPT QNXPLHHLIK PESHPHFPPP PQPHKGLIIS  360
PFQNLHVSSQ PNSNPTTSSA HLSATALLQK AATVGAAVAS GAQQGQSAGL TXGEFGTASH  420
MISTEYLGGF ASGELATWRK TDSLTRDFLG LNGDGTGHNN NNVRXVHVKD MLTYAGGVGF  480
HQPPYERLRG HDSLLKPQGF GFAETTTASE TWGDC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C5e-27151266367Zinc finger protein JACKDAW
5b3h_F5e-27151266367Zinc finger protein JACKDAW
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.167310.0bud| fruit
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008368735.20.0protein indeterminate-domain 12-like
TrEMBLA0A498KAF70.0A0A498KAF7_MALDO; Uncharacterized protein
STRINGXP_009370754.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18134275
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G02670.11e-102indeterminate(ID)-domain 12