PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000150165 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | Whirly | ||||||||
Protein Properties | Length: 126aa MW: 14202 Da PI: 6.2271 | ||||||||
Description | Whirly family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Whirly | 90 | 2.7e-28 | 51 | 110 | 53 | 112 |
Whirly 53 qsfalsatevaelvdlaskesceffhdpaakgsneGkvrkalkvePlpdGsGlfvnlsvt 112 q+f+ls+te+++lv+l+skes effhdp++++s+eGkvrk+lkvePlp GsG+f+nls + MDP0000150165 51 QVFSLSVTEIGSLVSLGSKESLEFFHDPFKGKSDEGKVRKVLKVEPLPXGSGHFFNLSNH 110 89*******************************************************965 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54447 | 2.51E-19 | 50 | 109 | IPR009044 | ssDNA-binding transcriptional regulator |
Pfam | PF08536 | 5.5E-23 | 51 | 109 | IPR013742 | Plant transcription factor |
Gene3D | G3DSA:2.30.31.10 | 1.9E-22 | 51 | 109 | IPR009044 | ssDNA-binding transcriptional regulator |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 126 aa Download sequence Send to blast |
MAVRIFKDHP NLAVMEKNSS HGCSGRCAFQ NEEEESQINQ NFTLFSLSFL QVFSLSVTEI 60 GSLVSLGSKE SLEFFHDPFK GKSDEGKVRK VLKVEPLPXG SGHFFNLSNH LFLEILVDIY 120 LHLIIP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4koo_A | 1e-30 | 45 | 108 | 60 | 123 | Single-stranded DNA-binding protein WHY1, chloroplastic |
4koo_B | 1e-30 | 45 | 108 | 60 | 123 | Single-stranded DNA-binding protein WHY1, chloroplastic |
4koo_C | 1e-30 | 45 | 108 | 60 | 123 | Single-stranded DNA-binding protein WHY1, chloroplastic |
4koo_D | 1e-30 | 45 | 108 | 60 | 123 | Single-stranded DNA-binding protein WHY1, chloroplastic |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mdo.13367 | 5e-89 | bud| fruit| leaf| root| stem |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Single-stranded DNA-binding protein that functions in both chloroplasts and nucleus. In chloroplasts, maintains plastid genome stability by preventing break-induced and short homology-dependent illegitimate recombinations. In nucleus, modulates telomere length homeostasis by inhibiting the action of the telomerase at the extreme termini of chromosomes. Is recruited to a distal element upstream of the kinesin KP1 to mediate the transcriptional repression of KP1. Is required for full salicylic acid-dependent plant disease resistance responses. Can bind double-stranded DNA in vivo. {ECO:0000269|PubMed:14960277, ECO:0000269|PubMed:17217467, ECO:0000269|PubMed:19666500, ECO:0000269|PubMed:19669906, ECO:0000269|PubMed:20551348, ECO:0000269|PubMed:21911368}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salicylic acid (SA) and infection by H.parasitica. {ECO:0000269|PubMed:14960277, ECO:0000269|PubMed:19669906}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001280971.1 | 4e-31 | single-stranded DNA-binding protein WHY1, chloroplastic | ||||
Swissprot | Q9M9S3 | 1e-29 | WHY1_ARATH; Single-stranded DNA-binding protein WHY1, chloroplastic | ||||
TrEMBL | A0A067GT73 | 1e-31 | A0A067GT73_CITSI; Uncharacterized protein | ||||
STRING | XP_008339936.1 | 2e-30 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6416 | 32 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G14410.1 | 4e-26 | ssDNA-binding transcriptional regulator |
Link Out ? help Back to Top | |
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Phytozome | MDP0000150165 |