PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000150055

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

C2H2

Protein Properties

Length: 366aa MW: 40099.9 Da PI: 7.3712

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000150055	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.6	0.00088	155	177	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C+++F++ L H +H MDP0000150055 155 YECKTCNRTFPSFQALGGHRASH 177 99**********99999998887 PP
2	zf-C2H2	13	0.00031	245	267	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cg F++ L H+r+H MDP0000150055 245 HECSICGAEFTSGQALGGHMRRH 267 78********************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13912	6.6E-13	154	179	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	6.84E-9	154	177	No hit	No description
PROSITE profile	PS50157	10.388	155	182	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.052	155	177	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	157	177	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	6.84E-9	240	267	No hit	No description
SMART	SM00355	0.01	245	267	IPR015880	Zinc finger, C2H2-like
Pfam	PF13912	1.3E-12	245	269	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	9.723	245	267	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	247	267	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 366 aa Download sequence Send to blast
MEAAGGDHHH QEDVMILGCK EQHSNNINIM KGKRTKRLRP QSPIPFAIPT NSSSPEGGTS 60 RGGGDGGENN NDCINSTNLS PTTSAELFQD STSEEEDMAN CLILLAQGQS RAASSSPNHH 120 HQPPNDHITT TSRKFLEATT VTAGKAAGAA GYYVYECKTC NRTFPSFQAL GGHRASHKKL 180 KANIGDDHKN KHLGIGXLPP SDEDQDTQSL KDNIFHINTS SSPLSLHLSN RGLVLSSNKS 240 SPKIHECSIC GAEFTSGQAL GGHMRRHRAP IGATNTTLSL TPPPVSAAFE SHQQQXKHQQ 300 QQPQLPMKKQ KSMLNLDLDL NLPAPSEDDH HKETKFVFAS NQQQQQQQEQ QQQERLRTQI 360 LVDCHY

Sequence ? help Back to Top

Protein Sequence Length: 366 aa Download sequence Send to blast

MEAAGGDHHH QEDVMILGCK EQHSNNINIM KGKRTKRLRP QSPIPFAIPT NSSSPEGGTS  60
RGGGDGGENN NDCINSTNLS PTTSAELFQD STSEEEDMAN CLILLAQGQS RAASSSPNHH  120
HQPPNDHITT TSRKFLEATT VTAGKAAGAA GYYVYECKTC NRTFPSFQAL GGHRASHKKL  180
KANIGDDHKN KHLGIGXLPP SDEDQDTQSL KDNIFHINTS SSPLSLHLSN RGLVLSSNKS  240
SPKIHECSIC GAEFTSGQAL GGHMRRHRAP IGATNTTLSL TPPPVSAAFE SHQQQXKHQQ  300
QQPQLPMKKQ KSMLNLDLDL NLPAPSEDDH HKETKFVFAS NQQQQQQQEQ QQQERLRTQI  360
LVDCHY

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008376265.2	0.0	zinc finger protein ZAT5-like
TrEMBL	A0A498JER9	0.0	A0A498JER9_MALDO; Uncharacterized protein
STRING	XP_008376265.1	0.0	(Malus domestica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF586	34	141

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G04390.1	1e-41	C2H2 family protein

Link Out ? help Back to Top
Phytozome	MDP0000150055