PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000149252
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family HD-ZIP
Protein Properties Length: 688aa    MW: 78250.6 Da    PI: 7.2783
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000149252genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox51.12.2e-162778556
                   SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
       Homeobox  5 ttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                   +++t eq+++Lee+F+++ +p+ ++re+L ++lgL+ +q+++WFqN+R++ k
  MDP0000149252 27 QRHTFEQIQRLEEFFRNCTHPDDDQREQLRRELGLDANQITFWFQNKRTQNK 78
                   567889******************************************9987 PP
2START131.51e-412174392206
                    HHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEE CS
          START   2 laeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetlev 84 
                    +a +a++el+k+ + ++p+W+ks+      +n+d + + f++++       ++e +++sgvv   +a lv  +ld + +W   ++    ka t+ev
  MDP0000149252 217 IAASAMEELIKLFQIDKPVWMKSPtdgrYLLNRDNYDKMFPKANHfrnscARVESSKDSGVVHISAAYLVDMFLDFN-KWEDLFPtiitKARTIEV 311
                    67899*******************988866777777777777666799999**************************.9*999999999******* PP

                    ECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE-- CS
          START  85 issg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlk 173
                    ++sg      g lqlm+ e+  lsplv  Rdf+f+R+++q + g+w i+dvS + ++   +     R+ +lpSg++ie++ ng+sk+tw+eh+ ++
  MDP0000149252 312 LESGmignrsGCLQLMYEEMHILSPLVLpRDFYFLRHCQQIELGTWFIADVSYNFTKGSFT--RQPRSWRLPSGCMIEDMHNGYSKITWIEHMAVD 405
                    **************************966*************************9999876..5556666************************** PP

                    SSXX.HHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
          START 174 grlp.hwllrslvksglaegaktwvatlqrqcek 206
                    +++  hwl+r l+ +++a ga +w  tlq+ ce+
  MDP0000149252 406 DKTQtHWLYRDLICRSVAYGAERWIVTLQKMCER 439
                    *9999***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.607.7E-16982IPR009057Homeodomain-like
SuperFamilySSF466893.76E-15979IPR009057Homeodomain-like
PROSITE profilePS5007115.242080IPR001356Homeobox domain
SMARTSM003896.1E-112284IPR001356Homeobox domain
PfamPF000464.6E-142778IPR001356Homeobox domain
CDDcd000861.33E-132881No hitNo description
PROSITE patternPS0002705578IPR017970Homeobox, conserved site
PROSITE profilePS5084843.152207442IPR002913START domain
SuperFamilySSF559614.81E-30207440No hitNo description
CDDcd088754.94E-104211438No hitNo description
SMARTSM002341.6E-26216439IPR002913START domain
PfamPF018529.5E-35217439IPR002913START domain
Gene3DG3DSA:3.30.530.202.6E-7273408IPR023393START-like domain
SuperFamilySSF559611.65E-10455670No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 688 aa     Download sequence    Send to blast
MELPRNHPTS GDGHEASSSR RENKKFQRHT FEQIQRLEEF FRNCTHPDDD QREQLRRELG  60
LDANQITFWF QNKRTQNKIQ NERAENIALH QLNESIRREN CLMRETLKNV VCPTCGGASI  120
PEEERQLNLQ RLRQENAYLK QEHDKVANLL SKYKGKPLSH IKSLAXVVGS SQNLSPGCSL  180
NHVIVRSPPL RLNLTNTAIA YQLNENVQME KALMKDIAAS AMEELIKLFQ IDKPVWMKSP  240
TDGRYLLNRD NYDKMFPKAN HFRNSCARVE SSKDSGVVHI SAAYLVDMFL DFNKWEDLFP  300
TIITKARTIE VLESGMIGNR SGCLQLMYEE MHILSPLVLP RDFYFLRHCQ QIELGTWFIA  360
DVSYNFTKGS FTRQPRSWRL PSGCMIEDMH NGYSKITWIE HMAVDDKTQT HWLYRDLICR  420
SVAYGAERWI VTLQKMCERF HCXMNGCVFG GVVTLPEGKX SLMKLSQRMV KNFCGMLSMA  480
GNLDXPQLSE VDNTGIQVSV HTSTEIGQPH GTIXSVATSX WLPLSTQMIF NFFKDEKTRV  540
QWDVLSNGNP VHXIAYISTG THPENRISII RPFTPTEDNM LILQECYIDP LGSFVIYAPV  600
DMQILNVAVX GEDSSNMSIL PSGFMISSDG RPEMGGACGS LLTVAFHILV SSPTTSKQMN  660
KELVATVNTL ISSNVEKIKV ALNCSGLD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0276171e-117AB027617.1 Pyrus pyrifolia gene for UDP-glucose pyrophosphorylase, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008365756.30.0homeobox-leucine zipper protein HDG11-like
TrEMBLA0A498JA400.0A0A498JA40_MALDO; Uncharacterized protein
STRINGXP_009367128.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF10263398
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G73360.10.0homeodomain GLABROUS 11