PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000147890

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

SRS

Protein Properties

Length: 343aa MW: 36964.7 Da PI: 7.1392

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000147890	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	184.6	4e-57	131	264	4	154
DUF702 4 gtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstklssaeskke 99 g+asCqdCGnqakkdC h+RCRtCCk+rg+dC thvkstWvpa+krrerqqqlaa+++++ + ++++ +++++ q +a + ++ MDP0000147890 131 GGASCQDCGNQAKKDCIHMRCRTCCKNRGLDCPTHVKSTWVPASKRRERQQQLAALQHQHHQ--QQDHLQQHQN-----Q---------QAAAASS 210 779*************************************************99665433..2222222221.....1.........1222335 PP DUF702 100 letsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 l++ ++P+ev+s+avfrcv+vs++dd+ ++aYqtav+i+Gh fkGiL d+G+e+ MDP0000147890 211 LDVVNFPPEVRSQAVFRCVKVSAMDDE-VQYAYQTAVNIAGHWFKGILNDHGPES 264 67888***************996.58********************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	1.5E-56	132	263	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	1.6E-26	134	176	IPR006510	Zinc finger, lateral root primordium type 1
TIGRFAMs	TIGR01624	6.9E-22	216	262	IPR006511	Lateral Root Primordium type 1, C-terminal

Sequence ? help Back to Top
Protein Sequence Length: 343 aa Download sequence Send to blast
MAGFFSLGRG GSDDQHNSNN PPPPDHHNHQ QIAPETLFWY KNEDVANQPY KGFELLQQQE 60 QLLQLQTQPP PRLYQPHPHH HQDLYASAAA LGVGPSSRGS DDTSSSRSAA AAFTMMRSSS 120 GGRGGSGGSG GGASCQDCGN QAKKDCIHMR CRTCCKNRGL DCPTHVKSTW VPASKRRERQ 180 QQLAALQHQH HQQQDHLQQH QNQQAAAASS LDVVNFPPEV RSQAVFRCVK VSAMDDEVQY 240 AYQTAVNIAG HWFKGILNDH GPESPNYNMN MAAETSSGGG VNFQPLNLIA GATTAVNTAS 300 IDGGGGHEGM AVAGSTTVID PSSLYPAPIN TYMGTQFFPP PRS

Sequence ? help Back to Top

Protein Sequence Length: 343 aa Download sequence Send to blast

MAGFFSLGRG GSDDQHNSNN PPPPDHHNHQ QIAPETLFWY KNEDVANQPY KGFELLQQQE  60
QLLQLQTQPP PRLYQPHPHH HQDLYASAAA LGVGPSSRGS DDTSSSRSAA AAFTMMRSSS  120
GGRGGSGGSG GGASCQDCGN QAKKDCIHMR CRTCCKNRGL DCPTHVKSTW VPASKRRERQ  180
QQLAALQHQH HQQQDHLQQH QNQQAAAASS LDVVNFPPEV RSQAVFRCVK VSAMDDEVQY  240
AYQTAVNIAG HWFKGILNDH GPESPNYNMN MAAETSSGGG VNFQPLNLIA GATTAVNTAS  300
IDGGGGHEGM AVAGSTTVID PSSLYPAPIN TYMGTQFFPP PRS

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: In germinating seeds, first detected at about 48 h after imbibition. In young seedlings grown in continuous light, present in the root/shoot transition zone, in the apex, and in the apical region of the cotyledons. Later observed in lateral root primordia and in emerging lateral roots, particularly in the root tips, as well as in the shoot apex and in the new leaves, especially in the apical and lateral hydathodes. In adult plants, accumulates in lateral root tips, lateral root primordia, and axillary shoot primordia. In flowers, expressed in the style and stigmatic surface of the pistil and in the receptacle (base) of the flower throughout the development of the pistil until anthesis and later in the silique. Fades out after fertilization. {ECO:0000269\|PubMed:11706176, ECO:0000269\|PubMed:16740146}.
Uniprot	TISSUE SPECIFICITY: Expressed in young organs such as shoot apices and root tips. Present in roots, stems, flowers, leaves, hydathodes and siliques. {ECO:0000269\|PubMed:10368174, ECO:0000269\|PubMed:11706176}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). Suppressor of the gibberellin (GA) signal transduction. {ECO:0000269\|PubMed:10368174, ECO:0000269\|PubMed:11706176, ECO:0000269\|PubMed:16740146}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008337853.2	0.0	protein SHI RELATED SEQUENCE 1
Swissprot	Q9XGX0	2e-78	SHI_ARATH; Protein SHORT INTERNODES
TrEMBL	A0A498KGF0	0.0	A0A498KGF0_MALDO; Uncharacterized protein
STRING	XP_008338021.1	1e-166	(Malus domestica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF882	34	125

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G51060.1	8e-59	Lateral root primordium (LRP) protein-related

Link Out ? help Back to Top
Phytozome	MDP0000147890

Publications ? help Back to Top
Islam MA, et al. Overexpression of the AtSHI gene in poinsettia, Euphorbia pulcherrima, results in compact plants. PLoS ONE, 2013. 8(1): p. e53377 [PMID:23308204] Pfannebecker KC,Lange M,Rupp O,Becker A An Evolutionary Framework for Carpel Developmental Control Genes. Mol. Biol. Evol., 2017. 34(2): p. 330-348 [PMID:28049761] Estornell LH,Landberg K,Cierlik I,Sundberg E SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis. Front Plant Sci, 2018. 9: p. 150 [PMID:29491878]